[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/util SeqFeatureUtil.java,1.9.2.4,1.9.2.5

[Mark G. <mg...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/util
In directory usw-pr-cvs1:/tmp/cvs-serv14497

Modified Files:
      Tag: sanger_branch
	SeqFeatureUtil.java 
Log Message:
Changed the main() test to work with the new GAMEAdapter api, setInput(),
setInputType().



Index: SeqFeatureUtil.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/util/SeqFeatureUtil.java,v
retrieving revision 1.9.2.4
retrieving revision 1.9.2.5
diff -C2 -d -r1.9.2.4 -r1.9.2.5
*** SeqFeatureUtil.java	25 Jan 2002 04:50:22 -0000	1.9.2.4
--- SeqFeatureUtil.java	13 Feb 2002 02:19:52 -0000	1.9.2.5
***************
*** 81,100 ****
    public static void main(String [] args) {
      GAMEAdapter xmlAdapter = new GAMEAdapter();
!     xmlAdapter.setFilename("/mnt/Users/jrichter/cvs/apollo/data/BACR26A16.bop.xml");
      CurationSet cs;
      try {
        cs = xmlAdapter.getCurationSet();
      } catch (DataAdapterException e) {
!       System.err.println("Couldn't get curation set for " + xmlAdapter.getFilename());
        return;
      }
  
      xmlAdapter = new GAMEAdapter();
!     xmlAdapter.setFilename("/mnt/Users/jrichter/cvs/apollo/data/BACR26A16.saved.xml");
      CurationSet cs2;
      try {
        cs2 = xmlAdapter.getCurationSet();
      } catch (DataAdapterException e) {
!       System.err.println("Couldn't get curation set for " + xmlAdapter.getFilename());
        return;
      }
--- 81,103 ----
    public static void main(String [] args) {
      GAMEAdapter xmlAdapter = new GAMEAdapter();
!     //xmlAdapter.setFilename("/mnt/Users/jrichter/cvs/apollo/data/BACR26A16.bop.xml");
!     xmlAdapter.setInputType(GAMEInputType.FILE);
!     xmlAdapter.setInput("/mnt/Users/jrichter/cvs/apollo/data/BACR26A16.bop.xml");
      CurationSet cs;
      try {
        cs = xmlAdapter.getCurationSet();
      } catch (DataAdapterException e) {
!       System.err.println("Couldn't get curation set for " + xmlAdapter.getInput());
        return;
      }
  
      xmlAdapter = new GAMEAdapter();
!     xmlAdapter.setInputType(GAMEInputType.FILE);
!     xmlAdapter.setInput("/mnt/Users/jrichter/cvs/apollo/data/BACR26A16.saved.xml");
      CurationSet cs2;
      try {
        cs2 = xmlAdapter.getCurationSet();
      } catch (DataAdapterException e) {
!       System.err.println("Couldn't get curation set for " + xmlAdapter.getInput());
        return;
      }