From: Bernd J. <ber...@pa...> - 2011-01-20 07:23:30
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Hi again... I am starting to work with JBrowse .... therefore I have many problems and questions ... ;) I sent an e-mail yesterday but the attachments were too big... so here the short version... I am working on a mac 10.5.8 and get the following error message: sh-3.2# bin/biodb-to-json.pl --conf data/config/HBN9.config.json working on refseq HNB8 working on track Genes got 1 features for Genes encountered object 'Bio::DB::GFF::Featname=ARRAY(0x6eab14)', but neither allow_blessed nor convert_blessed settings are enabled at /usr/local/apache/htdocs/jbrowse/bin/../lib/JsonGenerator.pm line 113. I believe this problem is related to the ID property in the last column as without this there is no problem. Should I remove all the IDs Also, do you have another example (in addition to the one on the web) that already displays the features CDS, gene, start/stop codon with the parent property in a nice way? Can I have it??? Thanks a lot for your kind support, Best, Bernd |