From: David B. <dav...@gm...> - 2010-10-12 06:23:26
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Thank you very much Ian. On Tue, Oct 12, 2010 at 1:38 AM, Ian Holmes <ih...@be...> wrote: > Thanks David. I just committed a fix and closed the ticket. Best wishes, > Ian > > David Breimann wrote: > >> >> The files are attached again. I hope you'd be able to recreate and solve >> the issue. >> >> Thanks, >> Dave >> >> >> ---------- Forwarded message ---------- >> From: *David Breimann* <dav...@gm... <mailto: >> dav...@gm...>> >> Date: Wed, Oct 6, 2010 at 10:59 PM >> Subject: JBrowse: Strange peaks appear in WIG tracks >> To: Mitch Skinner <mit...@be... <mailto: >> mit...@be...>> >> Cc: Ian Holmes <ih...@be... <mailto:ih...@be...>> >> >> >> Hi Mitch, >> >> I didn't send this to the mailing list to avoid sharing the large files >> with everyone, but feel free to cc your reply to the list. >> >> I've encountered a strange phenomena: some peaks appear in tracks created >> from WIG files with no apparent reason. The WIG doesn't have any value that >> supports a "peak" in those positions. >> >> Recreate the situation: >> * start with a clean JBrowse clone. >> * prepare-refseq with the attached fasta file (in the archive). >> * wig-to-json with the attached WIG file (in the archive). >> * Now zoom in to position 68000. Attached is a print-screen of what I see. >> Inspect the WIG and see all the values at this area are 2-3 and there's no >> peak. >> >> Keep up the good work! >> Dave >> >> >> >> ------------------------------------------------------------------------ >> >> |