[Gmod-apollo-cmts] CVS: apollo/data history.default,1.6,1.7

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Update of /cvsroot/gmod/apollo/data
In directory sc8-pr-cvs1:/tmp/cvs-serv30707/data

Modified Files:
	history.default 
Log Message:

Oops. human <-> mouse dbs are switched around in defaults.

Index: history.default
===================================================================
RCS file: /cvsroot/gmod/apollo/data/history.default,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** history.default	16 Apr 2003 10:14:57 -0000	1.6
--- history.default	16 Apr 2003 12:02:53 -0000	1.7
***************
*** 1,8 ****
  #Apollo data adapter history file
! #Wed Apr 16 11:10:12 BST 2003
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.database=homo_sapiens_snp_11_31
  apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:connection_string=jdbc\:mysql\://193.62.203.13\:3306
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.database=homo_sapiens_core_11_31
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:jdbc_driver=org.gjt.mm.mysql.Driver
--- 1,8 ----
  #Apollo data adapter history file
! #Wed Apr 16 13:01:40 BST 2003
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.database=mus_musculus_snp_11_3
  apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:connection_string=jdbc\:mysql\://193.62.203.13\:3306
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.database=mus_musculus_core_11_3
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:jdbc_driver=org.gjt.mm.mysql.Driver
***************
*** 14,20 ****
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.user=anonymous
  openHistory4%adapter=apollo.dataadapter.GFFAdapter
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.database=mus_musculus_snp_11_3
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:database=homo_sapiens_core_11_31
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:database=mus_musculus_core_11_3
  apollo.dataadapter.GAMEAdapter%FileSize=1
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.Feature=false
--- 14,20 ----
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.user=anonymous
  openHistory4%adapter=apollo.dataadapter.GFFAdapter
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.database=homo_sapiens_snp_11_31
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:database=mus_musculus_core_11_3
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:database=homo_sapiens_core_11_31
  apollo.dataadapter.GAMEAdapter%FileSize=1
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.Feature=false
***************
*** 71,113 ****
  openHistory0%path=www.ensembl.org
  apollo.dataadapter.GAMEAdapter%CytologySize=0
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:password=
  openHistory1%input=GAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGAAATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCAAGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTACGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAAAAACGTG
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:chrStartEndHistory0=Chr 4 150210813 151925397
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.database=mus_musculus_core_11_3
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.DnaDnaAlignment=false
- apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:host=193.62.203.13
  apollo.dataadapter.GFFAdapter%historyItem0=data/chr2.200000-4000000.gff
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.RepeatFeature=false
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.host=kaka.sanger.ac.uk
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.DnaDnaAlignment=false
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  openHistory3%adapter=apollo.dataadapter.EnsCGIAdapter
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.host=kaka.sanger.ac.uk
  apollo.dataadapter.GAMEAdapter%GeneSize=1
- apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.port=3306
  openHistory1%adapter=apollo.dataadapter.GAMEAdapter
  apollo.dataadapter.GAMEAdapter%SequenceItem0=GAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGAAATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCAAGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTACGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAAAAACGTG
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:jdbc_driver=org.gjt.mm.mysql.Driver
  openHistory4%filename=data/chr2.200000-4000000.gff
! apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:ensembl_driver=org.ensembl.driver.plugin.compara.ComparaMySQLDriver
  openHistory0%input=data/example.xml
  openHistory1%path=www.ensembl.org
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.DnaProteinAlignment=false
  apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:database=ensembl_compara_11_1
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.SimplePeptide=false
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.Feature=false
  openHistory4%inputType=file
- apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.user=anonymous
  DataAdapterChooser.recentAdapter=apollo.dataadapter.GAMEAdapter
  apollo.dataadapter.EnsCGIAdapter%chrStartEndItems=1
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.jdbc_driver=org.gjt.mm.mysql.Driver
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  apollo.dataadapter.GAMEAdapter%SequenceSize=1
  openHistory2%path=www.ensembl.org
- apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.jdbc_driver=org.gjt.mm.mysql.Driver
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.host=kaka.sanger.ac.uk
  apollo.dataadapter.EnsCGIAdapter%pathItem0=www.ensembl.org
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.gene=true
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.password=
--- 71,113 ----
  openHistory0%path=www.ensembl.org
  apollo.dataadapter.GAMEAdapter%CytologySize=0
  openHistory1%input=GAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGAAATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCAAGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTACGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAAAAACGTG
+ apollo.dataadapter.synteny.SyntenyAdapter%Human\:password=
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:chrStartEndHistory0=Chr 4 150210813 151925397
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.database=homo_sapiens_core_11_31
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.DnaDnaAlignment=false
  apollo.dataadapter.GFFAdapter%historyItem0=data/chr2.200000-4000000.gff
! apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:host=193.62.203.13
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.DnaDnaAlignment=false
! apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.host=kaka.sanger.ac.uk
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.RepeatFeature=false
  openHistory3%adapter=apollo.dataadapter.EnsCGIAdapter
+ apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.host=kaka.sanger.ac.uk
  apollo.dataadapter.GAMEAdapter%GeneSize=1
  openHistory1%adapter=apollo.dataadapter.GAMEAdapter
+ apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.port=3306
  apollo.dataadapter.GAMEAdapter%SequenceItem0=GAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGAAATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCAAGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTACGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAAAAACGTG
  openHistory4%filename=data/chr2.200000-4000000.gff
! apollo.dataadapter.synteny.SyntenyAdapter%Human\:jdbc_driver=org.gjt.mm.mysql.Driver
  openHistory0%input=data/example.xml
+ apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:ensembl_driver=org.ensembl.driver.plugin.compara.ComparaMySQLDriver
  openHistory1%path=www.ensembl.org
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.DnaProteinAlignment=false
+ apollo.dataadapter.synteny.SyntenyAdapter%Human\:ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
  apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:database=ensembl_compara_11_1
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.SimplePeptide=false
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.Feature=false
  openHistory4%inputType=file
  DataAdapterChooser.recentAdapter=apollo.dataadapter.GAMEAdapter
+ apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.user=anonymous
  apollo.dataadapter.EnsCGIAdapter%chrStartEndItems=1
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
+ apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.jdbc_driver=org.gjt.mm.mysql.Driver
  apollo.dataadapter.GAMEAdapter%SequenceSize=1
  openHistory2%path=www.ensembl.org
  apollo.dataadapter.EnsCGIAdapter%pathItem0=www.ensembl.org
+ apollo.dataadapter.synteny.SyntenyAdapter%Human\:variation.host=kaka.sanger.ac.uk
+ apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.jdbc_driver=org.gjt.mm.mysql.Driver
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:include.gene=true
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:sequence.password=
***************
*** 117,129 ****
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.Variation=false
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
- apollo.dataadapter.synteny.SyntenyAdapter%Human\:host=kaka.sanger.ac.uk
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:host=kaka.sanger.ac.uk
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  openHistory2%region=2L\:14596709-14600420
- apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:port=3306
  openHistory4%region=data/chr2.200000-4000000.gff
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.port=3306
- apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.gene=true
  openHistory1%filename=data/chr2.200000-4000000.gff
  openHistory3%path=www.ensembl.org
--- 117,129 ----
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.Variation=false
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.ensembl_driver=org.ensembl.driver.plugin.standard.MySQLDriver
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:host=kaka.sanger.ac.uk
+ apollo.dataadapter.synteny.SyntenyAdapter%Human\:host=kaka.sanger.ac.uk
  apollo.dataadapter.synteny.SyntenyAdapter%Human\:connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  openHistory2%region=2L\:14596709-14600420
  openHistory4%region=data/chr2.200000-4000000.gff
+ apollo.dataadapter.synteny.SyntenyAdapter%Human-Mouse\:port=3306
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:sequence.port=3306
  apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:include.gene=true
+ apollo.dataadapter.synteny.SyntenyAdapter%Mouse\:variation.connection_string=jdbc\:mysql\://kaka.sanger.ac.uk\:3306
  openHistory1%filename=data/chr2.200000-4000000.gff
  openHistory3%path=www.ensembl.org