#37 Additional glyph for high depth sam/bam

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Lincoln Stein
Gbrowse (28)
5
2010-09-13
2010-09-13
Keiran Raine
No

Hi,

Could a glyph type similar to the attached image be made available for when viewing SAM reads at the sequence level (~100bp). We have a new analysis type which created very high depth regions and would like to be able to interpret the allele frequency at each base rather than necessarily see the individual reads. I've attached an image of what I think would be useful (probably want to use grey for ins/del bases).

Kind regards
Keiran M Raine
kr2@sanger.ac.uk

Discussion

  • Keiran Raine
    Keiran Raine
    2010-09-13

    Possible styles

     
    Attachments
  • Scott Cain
    Scott Cain
    2010-09-13

    • assigned_to: scottcain --> lstein