When I load my genome data into CHADO, I get the following errors.
(but, the load itself was successful).
couldn't find GO:0005554 's cvterm_id in cvterm table
couldn't find GO:0008372 's cvterm_id in cvterm table
couldn't find GO:0000004 's cvterm_id in cvterm table
I have loaded the all the six ontologies, which comes as default options with CHADO (including GO).
These errors occur when my genome annotation uses the GO ids which are actually "alt_ids".
While, I dont know the reason to use alt_ids,
I am just wondering, if CHADO can be tricked to store, alt_ids as well.
lot of thanks in advance,