#499 One level annotations not displayed when loading from GFF3

open-fixed
elee
GFF3 (9)
5
2010-03-11
2010-03-11
elee
No

One level annotations are not being displayed when loading from GFF3.

Discussion

  • elee
    elee
    2010-03-11

    • status: open --> open-fixed
     
  • elee
    elee
    2010-03-11

    Apollo requires one level annotations to be wrapped within a FeatureSet. Fixed the GFF3 loading code to wrap the features.

     
  • Does this mean that the standard released version of Apollo which has not changed from July 2009 cannot load and display GFF3 and edits ? It is such a pity that MSPCrunch and Blixem do not work with modern ( or XML) blast2 output and Apollo cannot do GFF3 and edits. Where have all the simple, functional Blast viewers gone ? :-)

    Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException: Can't create feature without analyses
    at apollo.config.FeatureProperty.setAnalysisTypes(FeatureProperty.java:404)

     
  • I may have been using an older Apollo in my last bug report here. I found that I was unable to edit annotations but when I successfully clicked in preferences, no error message was sent to my GUI but I was not able to edit annotations and when I went back to preferences, the select box had silent unselected itself. The tiers config file was in a read-only directory.