#2 OBO 2 GO conversion

open
nobody
None
5
2005-06-08
2005-06-08
Shuly Avraham
No

I am using the script go2fmt.pl to convert obo file to go format.
There seem to be a problem with the obsolete terms relationships.
Problem with obsolete terms seem to also occur using the Java
DAG-Edit script obo2flat (but the problem is slightly different and I
guess this is for another bug report).

The obsolete terms are not being assigned relationships to the
appropriate obsolete aspect.

I tested loading the converted scripts to AmiGO.
This is when loading the OBO file - which is the way it's supposed to
be:
http://dev.plantontology.org/amigo-dev/go.cgi

This is when loading the GO format files after conversion:
http://dev.plantontology.org/amigo-test/go.cgi

Please let me know if you need examples of files - or db dumps.

Thanks,
Shuly.

Discussion

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