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#3 GO slims and the future

closed
nobody
None
5
2007-02-07
2005-03-03
girlwithglasses
No

A few ideas involving GO slims:

- rather than having the terms in the GO slim as being true GO terms,
let them be "artificial" terms which can represent boolean concepts,
e.g. 'binding NOT carbohydrate binding', 'glucose metabolism AND
sucrose metabolism', '(membrane or organelle) NOT cytoskeleton'.
This is similar to the existing map2slim bucket terms but more flexible.

- have a server-based GO slim script where the user can choose the
annotation data set and upload their custom GO slim set.
Downloadable version for people to use with their own data sets.

- some kind of exciting AmiGO-esque viewer for people to see the
results of the above ideas.

Discussion

  • Logged In: YES
    user_id=473796

    wrt to the last point, the GO browser could just show the GO slim tree
    structure and annotation numbers. The numbers could then be expanded
    into a list of gene products with links to the relevant AmiGO pages.

     
  • Logged In: YES
    user_id=473796
    Originator: YES

    Moved to the AmiGO big ideas wiki page

     
    • status: open --> closed