We've had a user get confused by the "caution" statement for the Term Enrichment tool. Perhaps this part
"Organisms where a proportion of the annotation coverage is provided by electronically inferred (IEA) data will not achieve complete results using the current version of this tool."
could be changed to
"Note that by default, the Term Enrichment tool uses annotation datasets that do not include electronically inferred (IEA) data, so results will be incomplete for organisms where a proportion of the annotation coverage is IEA-based."
... or something to that effect.