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Tree browser plugin doesn't show hidden files (starting with dot in file name) although "Show hidden files" option is enabled. In file browser it works as expected. I use Geany 1.22 on Arch Linux.
Possible patch sent to ML.
Fixed in Git
Although it's fixed, this bug should have been reported on the geany-plugins bug tracker: https://sourceforge.net/tracker/?group_id=222729&atid=1056532
TreeBrowser, like most plugins, is not part of Geany itself.