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After some hours I still haven't the faintest idea what I'm supposed to do in this game. Replace option --splash by --no-intro --windowed is clear, get the nice one page HTML manual instead of the PDF is also obvious, start a new game if you have "discovered" the pacific while actually finding no land in the atlantic might be okay, otherwise start a colony, and then what?
Frank, you might start with http://civilization.wikia.com/wiki/FreeCol_beginners%27_guide