Say I have pictures etc in the eclipse directory that my program needs... Then, fat jar should get them too!
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If the resources are on the classpath they will be packaged automatically.
If they are not, they can be added manually using the file-select dialog ("add..." Button). This option does not work well when using the one-jar feature.
Most problems occur from accessing the files as resources.
You can look at the help forum how to access the resources.
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Also .dll files that are in the project directory should be added - this is very important.
to add the directory of the jar file to the classpath to access resources on the same level, just add "." to the Class-Path input-field in the Fat-Jar Wizard Configuration Page.
You may add more dirs separated by spaces: ". conf/".
Also extern libs can be added this way: ". conf/ lib/externlib.jar"
It is not possible to add jni libs (DLLs) via the jar-manifest. This must be done explicitly by the java command "java -Djava.library.path=... ".
If the DLL resides in the same folder as the executable jar I think it is automatically recognized. You may take a look at the SWT-FAQ: http://fjep.sourceforge.net/fjepfaq.html