Re: [Fink-users] fink-package-precedence line 8 or 9 problem...

[Alexander H. <ale...@gm...>]

On 7/30/12 1:11 PM, Viv Kendon wrote:
> This is one I have never seen before:
> 
> /sw/src/fink.build/octave-atlas-x11-3.6.1-7/octave-3.6.1
>   fink-package-precedence .
> panic: memory wrap at 
> /System/Library/Perl/5.10.0/darwin-thread-multi-2level/Cwd
> .pm line 301.
> Compilation failed in require at 
> /System/Library/Perl/5.10.0/File/Find.pm line 8
> .
> Compilation failed in require at 
> /sw/bin/fink-package-precedence line 9.
> BEGIN failed--compilation aborted at 
> /sw/bin/fink-package-precedence line 9.
> ### execution of /tmp/fink.hKhVR failed, exit code 22
> ### execution of /tmp/fink.JZl9Q failed, exit code 22
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r 
> fink-buildlock-octave-atlas-x11-3.6.1-7
> (Reading database ... 340767 files and directories currently 
> installed.)
> Removing fink-buildlock-octave-atlas-x11-3.6.1-7 ...
> bootstrap_parent() 268435459
> Could not get location of job overrides database.
> launch_msg(): Socket is not connected
> bootstrap_parent() 268435459
> Could not get location of job overrides database.
> launch_msg(): Socket is not connected
> Reading buildlock packages...
>          All buildlocks accounted for.
> /sw/bin/dpkg-lockwait -i 
> /sw/fink/debs/fort77_1.18-19_darwin-x86_64.deb
> Selecting previously deselected package fort77.
> (Reading database ... 340766 files and directories currently 
> installed.)
> Unpacking fort77 (from .../fort77_1.18-19_darwin-x86_64.deb) 
> ...
> bootstrap_parent() 268435459
> Could not get location of job overrides database.
> launch_msg(): Socket is not connected
> Setting up fort77 (1.18-19) ...
> bootstrap_parent() 268435459
> Could not get location of job overrides database.
> launch_msg(): Socket is not connected
> 
> Failed: phase compiling: octave-atlas-x11-3.6.1-7 failed
> 
> (I think installing fort77 is because it temporarily removed 
> it for compiling octave?)
> 

Correct.

> Same thing next attempt at update-all but this time with 
> fontconfig2:
> 
> make[1]: Leaving directory 
> `/sw/src/fink.build/fontconfig2-dev-2.10.1-1/fontconf
> ig-2.10.1'
> fink-package-precedence --prohibit-bdep fontconfig2-dev .
> panic: memory wrap at 
> /System/Library/Perl/5.10.0/darwin-thread-multi-2level/Cwd
> .pm line 301.
> Compilation failed in require at 
> /System/Library/Perl/5.10.0/File/Find.pm line 8
> .
> Compilation failed in require at 
> /sw/bin/fink-package-precedence line 9.
> BEGIN failed--compilation aborted at 
> /sw/bin/fink-package-precedence line 9.
> ### execution of fink-package-precedence failed, exit code 
> 22
> 
> Package manager version: 0.34.1
> Distribution version: selfupdate-rsync Mon Jul 30 08:11:08 
> 2012, 10.6, x86_64
> Trees: local/main local/crypto stable/main stable/crypto 
> unstable/main unstable/crypto
> Xcode.app: 3.2.6
> Xcode command-line tools: 3.2.6
> Max. Fink build jobs:  4
> 
> Have I managed to get my fink install into some sort of 
> inconsistent state??  Updating Octave 3.60 was a little odd 
> but seemed to go OK after it removed a bunch of octave 
> sub-packages.  I don't have that log, it was an apt-get fix 
> I followed the instructions for:
> 
> While trying to install:
>    octave360-atlas-x11-3.6.0-8
>    octave360-atlas-x11-dev-3.6.0-8
>    octave360-atlas-x11-shlibs-3.6.0-8
> 
> The following inconsistencies found:
>    Unsatisfied dependency in control-atlas-oct360: 
> octave360-interpreter-atlas
>    Unsatisfied dependency in odepkg-atlas-oct360: 
> octave360-interpreter-atlas
>    Unsatisfied dependency in optiminterp-atlas-oct360:
> octave360-interpreter-atlas
>    Unsatisfied dependency in optim-atlas-oct360: 
> octave360-interpreter-atlas
>    Unsatisfied dependency in linear-algebra-atlas-oct360:
> octave360-interpreter-atlas
>    Unsatisfied dependency in nan-atlas-oct360: 
> octave360-interpreter-atlas
>    Unsatisfied dependency in octgpr-atlas-oct360: 
> octave360-interpreter-atlas
>    Unsatisfied dependency in bundle-octave360-atlas:
> octave360-interpreter-atlas
> 
> Trying to resolve dependencies...
> Could not resolve inconsistent dependencies!
> 
> Fink isn't sure how to install the above packages safely. 
> You may be able to fix things by running:
> 
>    fink scanpackages
>    sudo apt-get update
>    sudo apt-get install octave360-atlas-x11=3.6.0-8
> octave360-atlas-x11-shlibs=3.6.0-8 
> octave360-atlas-x11-dev=3.6.0-8
> 
> So I did and it seemed like it did.  I was also running fink 
> install maxima-x11 around the same time, but it failed on 
> wxmaxima-gtk-12.04.0-4, so I'll come back to that once the 
> current problem is sorted out.  I'm only mentioning these 
> things in case running multiple builds at once might have 
> messed things up (I assumed the build-locking would take 
> care of any potential problems by making things wait...)
> 
> TIA
> -- Viv
> ________________________________________________
> Dr Viv Kendon    http://quantum.leeds.ac.uk/~viv
> tel: +44 113 343 4864      Physics and Astronomy
> Quantum Information Group    University of Leeds
> 
> 
>

I saw a similar memory wrap error once (on 10.7.4), but I was only
building a single package.  It also didn't persist:  I retried the
_same_ operation and it worked the second time around.  It might be a
function of global resource usage on the machine.

The octave update might have been odd because the virtual package
Provide fields got changed.

-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/