Re: [Ergatis-users] dynamic queue name

[Jaysheel B. <bja...@gm...>]

Hey Anup,
	I got latest version of tigr-htc and confirmed that the code snippet is there, compiled and replaced new jar file.  Now however, I get an error 

		sge_submit result Unable to read script file because of error: ERROR! -q option must have queue list argument
	
	In sge_submit.sh file I see SGE_DIRECTIVE -q but there is not value for queue

		# config variables
		#SGE_DIRECTIVE -l arch=lx*

		#SGE_DIRECTIVE -l mem_total=1024M
		#SGE_DIRECTIVE -p -20
		#SGE_DIRECTIVE -q 
		#SGE_DIRECTIVE -r y 
		#SGE_DIRECTIVE -N RunWorkflow

	I have confirmed that $WORKFLOW_HOME/server-conf/htc.conf has properties 

		# Configuration parameters used by the SGERunner class
		sge_def_queue=centos6-ergatis-test
		sge_pri_queue=centos6-ergatis-test


Jaysheel


On May 22, 2012, at 8:33 PM, Mahurkar, Anup wrote:

> Jaysheel,
> 
> Could you confirm that this snippet of code exists in the SgeRunner class? It should be in the createSubmitFile method.
> 
> I do not see the debugging lines in the log file you sent me. Hence the question.
> 
> Anup
> 
> // If the user has specified a particular queue (Config.CmdClass), then set the queue name
> // with the -q directive else use the default configured in the htc.conf
> logger.debug("Queue name specified as: " + config.getCmdClass());
> if (config.getCmdClass() != null ) {
> p_out.println(SGE_DIRECTIVE + " -q " + config.getCmdClass());
> }
> else if (HTCConfig.getProperty("sge_def_queue") != null) {
> p_out.println(SGE_DIRECTIVE + " -q " + HTCConfig.getProperty("sge_def_queue"));
> }
> else {
> logger.warn("No queue specified in config file. Jobs might fail if epilog/prolog not on all queues");
> }
> 
> 
> From: Jaysheel Bhavsar <bja...@gm...>
> Reply-To: "erg...@li..." <erg...@li...>
> Date: Tue, 22 May 2012 11:40:44 -0500
> To: "erg...@li..." <erg...@li...>
> Subject: Re: [Ergatis-users] dynamic queue name
> 
> Hey Anup,
> Attached is the pipeline.xml.log and sge_job.sh file.
> 
> Jaysheel
> 
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