From: Mahurkar, A. <ama...@so...> - 2012-05-22 15:59:59
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Can you send me the log file an the shell script? Anup On May 22, 2012, at 11:54 AM, "Jaysheel Bhavsar" <bja...@gm...<mailto:bja...@gm...>> wrote: Hey Anup, I don't see any -q option in sge_job.sh script written in mock_server_base. In the log file I see a call to she_job.sh which looks like this qsub -b n -C '#SGE_DIRECTIVE' /projects/bsi/RandD/ngs/ergatis/mock_server_base/working/0/4521/sge_job.sh Which come from sge_submitter.sh from what I can tell. Jaysheel On May 21, 2012, at 8:22 PM, Mahurkar, Anup wrote: Jaysheel, The -q will be specified in the sge_job.sh script for each of the jobs. Is it not there? If not could you send me the log file? Anup On 5/21/12 3:52 PM, "Jaysheel Bhavsar" <bja...@gm...<mailto:bja...@gm...>> wrote: Hey Anup, I got the workflow-3.1.x branch and re-installed workflow. I updated sge_def_queue and sge_pri_queue in ${WORKFLOW_HOME}/server-conf/htc.conf file but jobs are still being submitted to default queue. I don't see -q option in the qsub command in sge_submitter.sh. Is there something I missed? Jaysheel On May 18, 2012, at 2:30 PM, Mahurkar, Anup wrote: Jaysheel, I have added the code to configure the default queue name that workflow uses as well as specifying a queue name in the workflow that will be honored. You will need to update the HTC and Workflow code. In the htc.conf file specify the default queue name to be used for workflow jobs. If nothing is specified in the command, it will look for the property "sge_def_queue" in the config file. We have made slight changes to epilog, prolog, and sge_submitter scripts as well. So your best bet is to reinstall workflow. Anup On 5/11/12 4:44 PM, "Mahurkar, Anup" <ama...@so...<mailto:ama...@so...>> wrote: Jaysheel, I am working on this feature right now. Should have it ready early next week. Anup On May 11, 2012, at 4:39 PM, "Jaysheel Bhavsar" <bja...@gm...<mailto:bja...@gm...>> wrote: Hey guys, I there a way to dynamically define queue name? Currently queue name is set in $WORKFLOW_HOME/bin/sge_submitter.sh. I would like to pass the queue name based on the pipeline I am executing, along with h_vmem and h_stack parameters. Thanks Jaysheel ----------------------------------------------------------------------- -- ----- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users ------------------------------------------------------------------------ -- ---- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users ------------------------------------------------------------------------- ----- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users -------------------------------------------------------------------------- ---- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Ergatis-users mailing list Erg...@li...<mailto:Erg...@li...> https://lists.sourceforge.net/lists/listinfo/ergatis-users |