Diversity Maps is a data visualization tool for plant geneticists and breeders. It generates publication-quality, vector-based chromosome maps displaying differences in marker states between individuals.

Features

  • Displays haplotype similarity by color;
  • Sorts accessions automatically to simplify visual inspection;
  • Generates distance-scaled, vector maps in Postscript format;
  • 'Passport' mode provides whole genome overviews per-accession;
  • You can fully customize view and modify any colors!

Project Samples

Spectral map: all-vs-all comparison (large SNP panel) Diversity map: 35 accessions, compared with 2 references Spectral maps of 2 varieties (part of diverse accession set)

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Diversity Maps Web Site

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Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Science/Research, Agriculture

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2011-03-12
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