Work at SourceForge, help us to make it a better place! We have an immediate need for a Support Technician in our San Francisco or Denver office.

Close

Tree [r15627] / cdk-taverna / trunk /
History



File Date Author Commit
doc 2007-09-04 thomaskuhn [r8877]
example 2007-09-04 thomaskuhn [r8878] Add new example workflows and remove the old on...
src 2009-03-02 thomaskuhn [r14351] Change the id of molecules to be loaded from th...
.classpath 2007-05-10 thomaskuhn [r8314] Fix some buges due to a change in the cdk, remo...
.project 2007-08-08 mario_baseda [r8672] Classes modified/added
ChangeLog 2008-08-28 thomaskuhn [r12136] Forgot to update the statistic
LICENSE 2007-01-04 thomaskuhn [r7620] Initial Import of the new maven based cdk-taver...
README 2008-05-30 thomaskuhn [r11245] update the readme
ReleaseNotes 2008-08-28 thomaskuhn [r12135] Update to a new Release.
javadoc.xml 2009-11-06 egonw [r15045] Added ant script to create the CDK-Taverna JavaDoc
pom.xml 2009-11-08 egonw [r15058] Attempt to get CDK-Taverna working for Taverna ...

Read Me

This project deals with embedding CDK in Taverna (taverna.sf.net) in order to get
a chemoinformatics workbench. Due to the current Taverna release 1.7.1 the whole structure of the cdk-taverna project changed.

This project now used Maven as build tool and at the end this project will be a Plugin for the current Taverna version. 


Thomas Kuhn

To get the current maven build cdk-taverna version installed as plugin within the Taverna version some steps are nesessary:

0. Make sure you have Sun Java 6.0 installed.

1. Install Maven 2.0.7, and make sure that it works correctly

2. Install a CDK version into your local maven repository

3. Compile the CDK-GLP with the dist-large ant task

4. Install the cdk-svn-DATE.jar into your local maven repository
	using the command: mvn install:install-file -Dfile=cdk-svn-DATE.jar -DgroupId=org.openscience -DartifactId=cdk -Dversion=1.X.X -Dpackaging=jar -DgeneratePom=true

5. Compile and test the downloades cdk-taverna code with the help of mvn test
   
6. Install the cdk-taverna jar into your local maven repository

7. If you have a running version of the cdk-taverna plugin in taverna you can copy the 
	installed CDK-Taverna version from your local maven repository into your Taverna repository



For writing your own processors or changing the existing ones:


If you add a local processor you have to register it in the META-INF\services\ and in the localworkers.properties
 org.embl.ebi.escience.scuflworkers.java.LocalWorker

Thomas