Attached an addition to the AtomContainerManipulator to remove non stereo-relevant hydrogens. This method does not remove all hydrogens. Currently it checks the heteroatom connected to the hydrogen for stereo parity and the bond between both atoms for stereo information. If either is present, the hydrogen is not removed. Additionally, if an IStereoElement is associated with that hydrogen, it is not removed.
Any comments or suggestions would be greatly appreciated.