Update of /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5405/src/org/openscience/cdk/qsar Modified Files: BondsToAtomDescriptor.java DescriptorEngine.java DescriptorSpecification.java VdWRadiusDescriptor.java WHIMDescriptor.java Log Message: Fixed a set of JavaDoc errors Index: BondsToAtomDescriptor.java =================================================================== RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar/BondsToAtomDescriptor.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- BondsToAtomDescriptor.java 28 Feb 2005 11:43:19 -0000 1.4 +++ BondsToAtomDescriptor.java 14 Mar 2005 12:53:19 -0000 1.5 @@ -1,5 +1,4 @@ -/* - * $RCSfile$ +/* $RCSfile$ * $Author$ * $Date$ * $Revision$ @@ -57,11 +56,10 @@ * </tr> * </table> * - *@author mfe4 - *@created 24 febbraio 2005 - *@cdk.created 2004-11-13 - *@cdk.module qsar - *@cdk.set qsar-descriptors + * @author mfe4 + * @cdk.created 2004-11-13 + * @cdk.module qsar + * @cdk.set qsar-descriptors */ public class BondsToAtomDescriptor implements Descriptor { Index: DescriptorEngine.java =================================================================== RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar/DescriptorEngine.java,v retrieving revision 1.9 retrieving revision 1.10 diff -u -r1.9 -r1.10 --- DescriptorEngine.java 24 Feb 2005 13:53:57 -0000 1.9 +++ DescriptorEngine.java 14 Mar 2005 12:53:19 -0000 1.10 @@ -210,14 +210,14 @@ } /** - * Calculates all available descriptors for a molecule. + * Calculates all available descriptors for a molecule. + * + * The results for a given descriptor as well as associated parameters and + * specifications are used to create a <code>DescriptorValue</code> + * object which is then added to the molecule as a property keyed + * on the <code>DescriptorSpecification</code> object for that descriptor * - * The results for a given descriptor as well as associated parameters and - * specifications are used to create a <code>DescriptorValue</code> - * object which is then added to the molecule as a property keyed - * on the <code>DescriptorSpecification</code> object for that descriptor - * - *@param Molecule The molecule for which we want to calculate descriptors + * @param molecule The molecule for which we want to calculate descriptors */ public void process(Molecule molecule) { for (int i = 0; i < descriptors.size(); i++) { Index: DescriptorSpecification.java =================================================================== RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar/DescriptorSpecification.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- DescriptorSpecification.java 11 Feb 2005 18:53:28 -0000 1.4 +++ DescriptorSpecification.java 14 Mar 2005 12:53:19 -0000 1.5 @@ -38,17 +38,17 @@ /** * Container for specifying the type of descriptor. * - * @param specification_reference Reference to a formal definition in a + * @param specificationReference Reference to a formal definition in a * dictionary (e.g. in STMML format) of the descriptor, preferably * refering to the original article. The format of the content is * expected to be <dictionaryNameSpace>:<entryID>. - * @param implementation_title Title for the implementation of the descriptor + * @param implementationTitle Title for the implementation of the descriptor * for which the algorithm is given by the specification. - * @param implementation_identifier Unique identifier for the actual + * @param implementationIdentifier Unique identifier for the actual * implementation, preferably including the exact version number of * the source code. E.g. $Id$ can be used when the source code is * in a CVS repository. - * @param implementation_vendor Name of the organisation/person/program/whatever + * @param implementationVendor Name of the organisation/person/program/whatever * who wrote/packaged the implementation. */ public DescriptorSpecification( Index: VdWRadiusDescriptor.java =================================================================== RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar/VdWRadiusDescriptor.java,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- VdWRadiusDescriptor.java 28 Feb 2005 12:09:35 -0000 1.6 +++ VdWRadiusDescriptor.java 14 Mar 2005 12:53:19 -0000 1.7 @@ -49,11 +49,10 @@ * </tr> * </table> * - *@author mfe4 - *@created 2005-02-24 - *@cdk.created 2004-11-13 - *@cdk.module qsar - *@cdk.set qsar-descriptors + * @author mfe4 + * @cdk.created 2004-11-13 + * @cdk.module qsar + * @cdk.set qsar-descriptors */ public class VdWRadiusDescriptor implements Descriptor { Index: WHIMDescriptor.java =================================================================== RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/qsar/WHIMDescriptor.java,v retrieving revision 1.12 retrieving revision 1.13 diff -u -r1.12 -r1.13 --- WHIMDescriptor.java 28 Feb 2005 12:09:35 -0000 1.12 +++ WHIMDescriptor.java 14 Mar 2005 12:53:19 -0000 1.13 @@ -87,7 +87,7 @@ * </tr> * </table> * - * @todo Fix up the &gamm; descriptors + * @cdk.todo Fix up the &gamm; descriptors * * @author Rajarshi Guha * @cdk.created 2004-12-1 |