Great that it's possible to debug using Eclipse now!
Could you look at line 141 (I placed a FIXME) in method endElement of
class MDMoleculeConvention? When ending the last Element it is not an
MDMolecule, allthough it is clearly casted into it in the startElement
() (I have debugged it). Could this be a bug in super()?
Also please look at line 171 (I placed a FIXME) in method
testMDMoleculeCustomizationRoundtripping of class MDMoleculeTest. I
don't know the best way to retrieve the MDMolecule from the list of
containers (there are many molecules in the IChemFile but only one
I committed r8071 with the latest updates.
Would be great if you could take a look at this as I'm completely stuck.