>> > Egon wrote:
>> > > Ok, what AtomIterator method should return the PDB atom names?
>> > JmolAdapter.AtomIterator.getAtomName()
>> Ok, working on it.
> That was too easy... :)
Good. Things generally work better when they are easy ;-)
> The PDBReader now stores the PDB atomtype CA etc, as
> AtomType.getAtomTypeName(), and Jmol's CdkJmolAdapter uses that to retu=
> with getAtomName()...
> Trace, backbone, cartoons and ribbons work now.
> What's next? :) (patches being commited...)
Don't know ... let's see ...
try it out on some DNA ... samples/pdb/1D68.pdb
Try 'cartoons' and make sure that the nucleotide bases are being
Try an alpha-carbon-only protein ... samples/pdb/1ALM.pdb
Make sure that you are returning the 'chain' character correctly.
using something that has more than 1 chain ... samples/pdb/1A00.pdb,
If you have implemented all the things in the JmolAdapter.AtomIterator,
then it (hopefully) should just work.