i have seen the org.openscience.cdk.smiles.smarts.SMARTSQueryTool documentation.
it is fantastic.It contains very valuable method that we need.
 But one thing is not clear to me , previously we were doing a matching in UniversalIsomorphismTester now we will use SMARTQueryTool insted ok that is clear,then what does this line means..
User code that wants to do SMARTS matching should use this rather than using SMARTSParser directly
we are not using the smartsParser any way to do SMARTS matching,it's a UniversalIsomorphismTester ,
may be i am missing something,
does latest update contain this class, otherwise please mail me this one.

sushil ronghe
Center of Pharmacoinformatics