No problem,

For your example you can convert from the input to the explicit form with the AtomContainerManipulator: 

http://cdk.github.io/cdk/1.5/docs/api/org/openscience/cdk/tools/manipulator/AtomContainerManipulator.html#convertImplicitToExplicitHydrogens(org.openscience.cdk.interfaces.IAtomContainer)

J

On 18 Jun 2014, at 16:45, Rafel Israels <rafelisraels@googlemail.com> wrote:

Hi John,

thanks for your fast answer, that solves my issue !

I am using Version 1.5, but wasn't aware of the different definitions of "explicit smiles". The CDK definition makes sense to me and now all is displayed as expected !

thanks again,

Rafel


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