Commit [c1c8e4] Maximize Restore History

Added more closing of IO resources

Change-Id: I68cd72f7a2c761c969cc707f0492b0f0f87c9591
Signed-off-by: John May <john.wilkinsonmay@gmail.com>

Egon Willighagen Egon Willighagen 2014-08-07

John May John May 2014-08-08

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changed legacy
changed legacy/src
changed legacy/src/test
changed legacy/src/test/java
changed legacy/src/test/java/org
changed legacy/src/test/java/org/openscience
changed legacy/src/test/java/org/openscience/cdk
changed legacy/src/test/java/org/openscience/cdk/ringsearch
changed legacy/src/test/java/org/openscience/cdk/ringsearch/SSSRFinderTest.java
changed storage
changed storage/io
changed storage/io/src
changed storage/io/src/main
changed storage/io/src/main/java
changed storage/io/src/main/java/org
changed storage/io/src/main/java/org/openscience
changed storage/io/src/main/java/org/openscience/cdk
changed storage/io/src/main/java/org/openscience/cdk/io
changed storage/io/src/main/java/org/openscience/cdk/io/MDLRXNReader.java
changed storage/io/src/main/java/org/openscience/cdk/io/MDLRXNV2000Reader.java
changed storage/io/src/main/java/org/openscience/cdk/io/MDLRXNV3000Reader.java
changed storage/io/src/test
changed storage/io/src/test/java
changed storage/io/src/test/java/org
changed storage/io/src/test/java/org/openscience
changed storage/io/src/test/java/org/openscience/cdk
changed storage/io/src/test/java/org/openscience/cdk/io
changed storage/io/src/test/java/org/openscience/cdk/io/CDKSourceCodeWriterTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/CTXReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/GhemicalReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/MDLV3000ReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/Mol2WriterTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/PCCompoundASNReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/PCCompoundXMLReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/PMPReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/RGroupQueryReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/ShelXReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/XYZReaderTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml
changed storage/io/src/test/java/org/openscience/cdk/io/cml/CML23FragmentsTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml/CML25FragmentsTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml/CMLFragmentsTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml/JChemPaintTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml/JmolTest.java
changed storage/io/src/test/java/org/openscience/cdk/io/cml/JumboTest.java
changed storage/libiocml
changed storage/libiocml/src
changed storage/libiocml/src/test
changed storage/libiocml/src/test/java
changed storage/libiocml/src/test/java/org
changed storage/libiocml/src/test/java/org/openscience
changed storage/libiocml/src/test/java/org/openscience/cdk
changed storage/libiocml/src/test/java/org/openscience/cdk/io
changed storage/libiocml/src/test/java/org/openscience/cdk/io/MDLCMLRoundtripTest.java
changed storage/libiocml/src/test/java/org/openscience/cdk/io/cml
changed storage/libiocml/src/test/java/org/openscience/cdk/io/cml/CMLRoundTripTest.java
changed storage/libiocml/src/test/java/org/openscience/cdk/io/cml/CMLRoundTripTool.java
changed storage/libiomd
changed storage/libiomd/src
changed storage/libiomd/src/test
changed storage/libiomd/src/test/java
changed storage/libiomd/src/test/java/org
changed storage/libiomd/src/test/java/org/openscience
changed storage/libiomd/src/test/java/org/openscience/cdk
changed storage/libiomd/src/test/java/org/openscience/cdk/libio
changed storage/libiomd/src/test/java/org/openscience/cdk/libio/md
changed storage/libiomd/src/test/java/org/openscience/cdk/libio/md/MDMoleculeTest.java
changed storage/pdb
changed storage/pdb/src
changed storage/pdb/src/main
changed storage/pdb/src/main/java
changed storage/pdb/src/main/java/org
changed storage/pdb/src/main/java/org/openscience
changed storage/pdb/src/main/java/org/openscience/cdk
changed storage/pdb/src/main/java/org/openscience/cdk/templates
changed storage/pdb/src/main/java/org/openscience/cdk/templates/AminoAcids.java
changed storage/pdb/src/test
changed storage/pdb/src/test/java
changed storage/pdb/src/test/java/org
changed storage/pdb/src/test/java/org/openscience
changed storage/pdb/src/test/java/org/openscience/cdk
changed storage/pdb/src/test/java/org/openscience/cdk/io
changed storage/pdb/src/test/java/org/openscience/cdk/io/PDBReaderTest.java
changed storage/pdb/src/test/java/org/openscience/cdk/io/PDBWriterTest.java
changed storage/pdbcml
changed storage/pdbcml/src
changed storage/pdbcml/src/test
changed storage/pdbcml/src/test/java
changed storage/pdbcml/src/test/java/org
changed storage/pdbcml/src/test/java/org/openscience
changed storage/pdbcml/src/test/java/org/openscience/cdk
changed storage/pdbcml/src/test/java/org/openscience/cdk/io
changed storage/pdbcml/src/test/java/org/openscience/cdk/io/cml
changed storage/pdbcml/src/test/java/org/openscience/cdk/io/cml/PDBAtomCustomizerTest.java
changed storage/pdbcml/src/test/java/org/openscience/cdk/libio
changed storage/pdbcml/src/test/java/org/openscience/cdk/libio/cml
changed storage/pdbcml/src/test/java/org/openscience/cdk/libio/cml/PDBAtomCustomizerTest.java
changed tool
changed tool/pcore
changed tool/pcore/src
changed tool/pcore/src/test
changed tool/pcore/src/test/java
changed tool/pcore/src/test/java/org
changed tool/pcore/src/test/java/org/openscience
changed tool/pcore/src/test/java/org/openscience/cdk
changed tool/pcore/src/test/java/org/openscience/cdk/pharmacophore
changed tool/pcore/src/test/java/org/openscience/cdk/pharmacophore/PharmacophoreMatcherTest.java
legacy
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storage
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storage/io
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storage/io/src
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storage/io/src/main/java/org/openscience/cdk/io/MDLRXNReader.java Diff Switch to side-by-side view
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storage/io/src/main/java/org/openscience/cdk/io/MDLRXNV2000Reader.java Diff Switch to side-by-side view
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storage/io/src/main/java/org/openscience/cdk/io/MDLRXNV3000Reader.java Diff Switch to side-by-side view
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storage/io/src/test
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storage/io/src/test/java/org/openscience/cdk/io/CTXReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/GhemicalReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/MDLV3000ReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/Mol2WriterTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/PCCompoundASNReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/PCCompoundXMLReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/PMPReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/RGroupQueryReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/ShelXReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/XYZReaderTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/CML23FragmentsTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/CML25FragmentsTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/CMLFragmentsTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/JChemPaintTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/JmolTest.java Diff Switch to side-by-side view
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storage/io/src/test/java/org/openscience/cdk/io/cml/JumboTest.java Diff Switch to side-by-side view
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storage/libiocml
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storage/libiocml/src/test/java/org/openscience/cdk/io/cml/CMLRoundTripTool.java Diff Switch to side-by-side view
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storage/libiomd
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storage/pdb
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storage/pdb/src
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storage/pdb/src/main/java/org/openscience/cdk/templates/AminoAcids.java Diff Switch to side-by-side view
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storage/pdb/src/test/java/org/openscience/cdk/io/PDBReaderTest.java Diff Switch to side-by-side view
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storage/pdb/src/test/java/org/openscience/cdk/io/PDBWriterTest.java Diff Switch to side-by-side view
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storage/pdbcml
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storage/pdbcml/src/test/java/org/openscience/cdk/libio/cml/PDBAtomCustomizerTest.java Diff Switch to side-by-side view
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tool
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tool/pcore/src
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tool/pcore/src/test/java/org/openscience/cdk/pharmacophore/PharmacophoreMatcherTest.java Diff Switch to side-by-side view
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