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[927733] (331-m-aFewBugFixes) by Egon Willighagen Egon Willighagen

Work with AtomContainers (fixes #2788763)

2011-10-02 13:10:39 Tree
[ae0fd2] by Egon Willighagen Egon Willighagen

Allow IChemModels to contain IAtomContainerSets (addresses #2784940)

2011-10-02 13:10:39 Tree
[6ff1f7] by Egon Willighagen Egon Willighagen , pushed by Rajarshi  Guha Rajarshi Guha

Replaces junit.framework.Assert from JUnit3 with org.junit.Assert from JUnit4 (fixing #2831081)

Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com>

2011-09-28 18:45:31 Tree
[45a759] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Fix to permutation unit tests

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-19 14:18:20 Tree
[40fe77] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Split AtomContainerPermutorTest into one for the Atom and Bond permutors

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-18 18:18:57 Tree
[88ceb3] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Unit tests for the Permutor class and fix to permutor.

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-18 18:18:57 Tree
[217977] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

ISBN number for the reference

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-18 18:18:57 Tree
[acd8e9] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Re-write of the atom container permutation classes. An extra class 'Permutor' is now the base class for permutations, and contains some more functionality than before.

Signed-off-by: maclean <gilleain.torrance@gmail.com>
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-18 18:18:57 Tree
[04adfc] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Re-write of the atom container permutation classes

Signed-off-by: maclean <gilleain.torrance@gmail.com>
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-18 18:18:57 Tree
[16efbc] by Egon Willighagen Egon Willighagen

Removed commented out code

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-18 17:54:48 Tree
[c1a69a] by Egon Willighagen Egon Willighagen

Removed needless explicitly qualified vecmath types

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-18 17:54:40 Tree
[191ea5] by Egon Willighagen Egon Willighagen

Merged in cdk-1.4.x with the 1.4.3 changes

2011-09-18 17:48:02 Tree
[f5f9d2] by Egon Willighagen Egon Willighagen

Open for more fixes...

2011-09-18 08:00:49 Tree
2011-09-18 06:34:31 Tree
[865070] by Egon Willighagen Egon Willighagen

Ported ArrowElement from renderextra to renderbasic

2011-09-18 05:55:09 Tree
[aeaa99] by Egon Willighagen Egon Willighagen

Added missing cloning of the properties

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-18 05:45:31 Tree
[a1894f] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Convenience method for getting an atom container directly from a formula string

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>

2011-09-16 14:55:57 Tree
[932b63] by Egon Willighagen Egon Willighagen

Merge branch 'cdk-1.4.x'

2011-09-16 14:35:20 Tree
[496f24] by Egon Willighagen Egon Willighagen

Removed add/removeListener() calls

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-16 14:20:06 Tree
[822189] by Egon Willighagen Egon Willighagen

Removed notifyChanged() calls

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-16 14:19:59 Tree
[78fb9c] by Egon Willighagen Egon Willighagen

Implemented the silent module as a nonotify replacement, copied from the data module, with tests copied from test-nonotify.

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-16 14:19:32 Tree
[face5c] by maclean maclean , pushed by Egon Willighagen Egon Willighagen

Handle a CDKException thrown by the Parser by throwing an IllegalArgumentException in the constructor

Signed-off-by: jonalv <jonathan.alvarsson@gmail.com>

2011-09-12 13:00:07 Tree
[6a9885] by Egon Willighagen Egon Willighagen

Merge branch 'cdk-1.4.x'

2011-09-12 12:42:02 Tree
[294cec] by Egon Willighagen Egon Willighagen

Added two missing tests to overwrite the notifying default implementation

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-12 10:39:12 Tree
[d81fc3] by Egon Willighagen Egon Willighagen

Added missing call to super

Signed-off-by: maclean <gilleain.torrance@gmail.com>

2011-09-12 09:06:51 Tree
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