Reporting policy of equally good alignments

  • Hello

    If a reference sequence contains both the sense and antisense sequence of a feature (e.g. a hairpin), does bowtie randomly select the alignment to report for a perfectly matching read, or does it have a preference for one strand or the other (e.g. sense over antisense)?


  • 9XNCZN I really liked your blog article.Really looking forward to read more. Great.

  • Say, you got a nice blog. Much obliged.

  • fvj1Q4 Enjoyed every bit of your blog.Thanks Again. Great.

  • G7okph Awesome blog.Much thanks again. Want more.

  • A51OD0 Thanks so much for the blog.Much thanks again. Really Cool.

  • lz4fb3 Im grateful for the blog article.Thanks Again. Much obliged.