Search bugs: !status:closed-duplicate && !status:closed-accepted && !status:wont-fix && !status:closed-fixed && !status:closed Maximize Restore

Showing results of 50

# Summary Milestone Status Owner Created Updated Priority
307 Mapping position of a read was out of the reference sequence v0.9.0 open 6 days ago 4 days ago 5  
306 Crash without any errors when using --un for PhiX filtering v0.9.0 open 2014-04-07 2014-04-07 5  
304 Uniqueness miscomputed by Ns in Bowtie 1.0.0 v0.9.0 open Ben Langmead 2014-03-19 2014-03-19 5  
303 XS field is the same for best and non-best scoring alignments of a same read v0.9.0 open 2014-03-12 2014-03-12 5  
299 bug in detection of redundant alignments with soft-clipping v0.9.0 open 2014-01-11 2014-01-11 5  
298 -a option reports different read matches for two identical repeats in reference v0.9.0 open 2013-12-26 2014-03-26 5  
297 Bowtie2 2.1.0 win32 bowtie2-align.exe crashes in Windows XP v0.9.0 open Val 2013-12-19 2014-02-12 5  
295 tophat2 - Encountered internal Bowtie 2 exception (#1) v0.9.0 closed Val 2013-12-05 2014-02-17 5  
294 Probleme with Bowtie 2 version 2.1.0 v0.9.0 open Ben Langmead 2013-11-28 2013-11-28 5  
286 Error in quality conversion v2.1.0.0 None open 2013-05-13 2013-05-13 5  
285 Not catching an obvious alignment None open 2013-05-09 2013-05-09 5  
281 bowtie 0.12.9 + MacOS 10.6 None open 2013-04-01 2013-04-01 5  
280 Out of memory allocating offs[] with 32G Ram v0.9.0 pending Val 2013-03-21 2014-01-30 5  
276 bowtie2 -k n parameter doesnt report n matches when n exist None open 2013-02-17 2013-02-18 5  
275 bowtie 2 fails to report read as multi-read in paired mode None open 2013-02-09 2013-02-09 5  
268 bowtie2 overlapping pairs None open 2013-01-20 2013-01-20 5  
267 bowtie2 overlapping pairs None open 2013-01-20 2013-01-20 5  
265 bowtie2-build failed None open 2013-01-09 2013-01-28 5  
257 Bowtie 2.0.2 corrupt fastq output None pending 2012-11-08 2012-12-16 5  
256 Bowtie2 slower after 2.0.0.beta6 None open 2012-11-05 2013-01-04 5  
251 -trim5 bases are reported as "M"atching in CIGAR None pending 2012-10-02 2012-12-14 5  
243 Bowtie fails at high -m on some data sets None open 2012-09-20 2012-09-20 5  
242 reference sequence dependent mis-assembly None open 2012-09-17 2012-12-14 5  
241 no-mixed and no-discordant do not work together None pending 2012-09-12 2012-12-16 5  
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