#284 Bos Taurus Index

v0.9.0
closed
Val
None
5
2014-03-05
2013-05-07
Anonymous
No

Hello,

I have recently begun mapping with the index on the Bowtie website, but I found problems in other applications because the SAM header generated by Bowtie with the cow genome index is invalid. About 400 of the @SQ records are duplicated. Could you update the cow index, so that everyone who uses them can get valid output SAM files ?

Discussion

  • Val
    Val
    2014-02-19

    • assigned_to: Val
    • Group: --> v0.9.0
     
  • Ben Langmead
    Ben Langmead
    2014-02-26

    Our fault -- we included the ChrY-contigs and contigs.SHOTGUN_ONLY FASTA files, both of which are subsets of the ChrU FASTA file. We will fix this by uploading a new index with those FASTA file omitted. Thank you for the report!

    Best,
    ben

     
  • Val
    Val
    2014-03-05

    I updated the indexes. Thank you for letting us know about this.

    Val

     
  • Val
    Val
    2014-03-05

    • status: open --> closed
     
  • Val
    Val
    2014-03-05

    index updated.