#662 selecting atoms and then pressing copy causes avogadro to crash

v_0.1.0
pending
nobody
None
1
2015-03-01
2013-02-05
Anonymous
No

selecting atoms and then pressing copy causes avogadro to crash

rocess: Avogadro [1856]
Path: /Applications/Avogadro.app/Contents/MacOS/Avogadro
Identifier: net.sourceforge
Version: ??? (1.1.0)
Code Type: X86-64 (Native)
Parent Process: launchd [253]

Date/Time: 2013-02-05 13:35:14.913 -0500
OS Version: Mac OS X 10.7.5 (11G63)
Report Version: 9

Interval Since Last Report: 952052 sec
Crashes Since Last Report: 11
Per-App Interval Since Last Report: 120283 sec
Per-App Crashes Since Last Report: 8
Anonymous UUID: E0F35544-3EF2-4EB3-A4F6-CE47838B5E4C

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000090

VM Regions Near 0x90:
-->
__TEXT 0000000100000000-000000010009b000 [ 620K] r-x/rwx SM=COW /Applications/Avogadro.app/Contents/MacOS/Avogadro

Application Specific Information:
Performing @selector(qtDispatcherToQAction:) from sender NSMenuItem 0x11224c440
objc[1856]: garbage collection is OFF

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libopenbabel.4.0.0.dylib 0x0000000101530ddf OpenBabel::StartRule1(std::vector<unsigned int,="" std::allocator<unsigned="" int=""> > const&, std::vector<OpenBabel::StereoRing, std::allocator<OpenBabel::StereoRing=""> > const&, std::vector<OpenBabel::OBStereoUnit, std::allocator<OpenBabel::OBStereoUnit=""> >&, std::vector<unsigned int,="" std::allocator<unsigned="" int=""> >&) + 863
1 libopenbabel.4.0.0.dylib 0x0000000101533a09 OpenBabel::FindStereogenicUnits(OpenBabel::OBMol, std::vector<unsigned int,="" std::allocator<unsigned="" int=""> > const&) + 4681
2 libopenbabel.4.0.0.dylib 0x00000001015349e0 OpenBabel::StereoFrom3D(OpenBabel::OBMol
, bool) + 192
3 libopenbabel.4.0.0.dylib 0x00000001015292a5 OpenBabel::PerceiveStereo(OpenBabel::OBMol, bool) + 37
4 mdlformat.so 0x000000010c67804f OpenBabel::MDLFormat::WriteMolecule(OpenBabel::OBBase
, OpenBabel::OBConversion) + 475
5 libopenbabel.4.0.0.dylib 0x00000001014bc171 OpenBabel::OBConversion::Write(OpenBabel::OBBase
, std::ostream) + 303
6 libopenbabel.4.0.0.dylib 0x00000001014bc3eb OpenBabel::OBConversion::WriteString(OpenBabel::OBBase
, bool) + 85
7 net.sourceforge 0x000000010001cba9 Avogadro::MainWindow::prepareClipboardData(Avogadro::PrimitiveList) + 1527
8 net.sourceforge 0x000000010001d49d Avogadro::MainWindow::copy() + 45
9 net.sourceforge 0x0000000100012635 Avogadro::MainWindow::qt_static_metacall(QObject*, QMetaObject::Call, int, void) + 393
10 QtCore 0x00000001011f809e QMetaObject::activate(QObject, QMetaObject const, int, void
) + 1566
11 QtGui 0x00000001002a2641 QAction::triggered(bool) + 49
12 QtGui 0x00000001002a39d4 QAction::activate(QAction::ActionEvent) + 180
13 QtGui 0x000000010025628a -[QCocoaMenuLoader qtDispatcherToQAction:] + 106
14 com.apple.CoreFoundation 0x00007fff8d10370d -[NSObject performSelector:withObject:] + 61
15 com.apple.AppKit 0x00007fff944ba8ca -[NSApplication sendAction:to:from:] + 139
16 com.apple.AppKit 0x00007fff945a77ff -[NSMenuItem _corePerformAction] + 399
17 com.apple.AppKit 0x00007fff945a7536 -[NSCarbonMenuImpl performActionWithHighlightingForItemAtIndex:] + 125
18 com.apple.AppKit 0x00007fff945250d4 -[NSMenu performKeyEquivalent:] + 281
19 com.apple.AppKit 0x00007fff94523d25 -[NSApplication _handleKeyEquivalent:] + 526
20 com.apple.AppKit 0x00007fff9441ce86 -[NSApplication sendEvent:] + 4282
21 QtGui 0x0000000100256ea4 -[QNSApplication sendEvent:] + 84
22 com.apple.AppKit 0x00007fff943b3a0e -[NSApplication run] + 555
23 QtGui 0x0000000100261c80 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1824
24 QtCore 0x00000001011deb94 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
25 QtCore 0x00000001011def44 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 324
26 QtCore 0x00000001011e162c QCoreApplication::exec() + 188
27 net.sourceforge 0x0000000100010e3a main + 7002
28 net.sourceforge 0x0000000100003cb4 start + 52

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff8f8947e6 kevent + 10
1 libdispatch.dylib 0x00007fff900c3786 _dispatch_mgr_invoke + 923
2 libdispatch.dylib 0x00007fff900c2316 _dispatch_mgr_thread + 54

Thread 2:
0 libsystem_kernel.dylib 0x00007fff8f893df2 __select + 10
1 QtCore 0x0000000101210c35 qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 389
2 QtCore 0x0000000101214f13 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435
3 QtCore 0x00000001012153e2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178
4 QtCore 0x00000001011deb94 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
5 QtCore 0x00000001011def44 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 324
6 QtCore 0x00000001010c79b8 QThread::exec() + 312
7 QtCore 0x00000001010cb06a QThreadPrivate::start(void
) + 298
8 libsystem_c.dylib 0x00007fff92b268bf _pthread_start + 335
9 libsystem_c.dylib 0x00007fff92b29b75 thread_start + 13

Thread 3:
0 libsystem_kernel.dylib 0x00007fff8f893df2 __select + 10
1 QtCore 0x0000000101210c35 qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 389
2 QtCore 0x0000000101214f13 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435
3 QtCore 0x00000001012153e2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178
4 QtCore 0x00000001011deb94 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
5 QtCore 0x00000001011def44 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 324
6 QtCore 0x00000001010c79b8 QThread::exec() + 312
7 QtCore 0x00000001010cb06a QThreadPrivate::start(void
) + 298
8 libsystem_c.dylib 0x00007fff92b268bf _pthread_start + 335
9 libsystem_c.dylib 0x00007fff92b29b75 thread_start + 13

Thread 4:
0 libsystem_kernel.dylib 0x00007fff8f893df2 __select + 10
1 QtCore 0x0000000101210b3e qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 142
2 QtCore 0x0000000101214f13 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435
3 QtCore 0x00000001012153e2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178
4 QtCore 0x00000001011deb94 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
5 QtCore 0x00000001011def44 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 324
6 QtCore 0x00000001010c79b8 QThread::exec() + 312
7 QtCore 0x00000001010cb06a QThreadPrivate::start(void
) + 298
8 libsystem_c.dylib 0x00007fff92b268bf _pthread_start + 335
9 libsystem_c.dylib 0x00007fff92b29b75 thread_start + 13

Thread 5:
0 libsystem_kernel.dylib 0x00007fff8f894192 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff92b28594 _pthread_wqthread + 758
2 libsystem_c.dylib 0x00007fff92b29b85 start_wqthread + 13

Thread 6:
0 libsystem_kernel.dylib 0x00007fff8f893df2 __select + 10
1 QtCore 0x0000000101210c35 qt_safe_select(int, fd_set, fd_set, fd_set, timeval const) + 389
2 QtCore 0x0000000101214f13 QEventDispatcherUNIXPrivate::doSelect(QFlags<QEventLoop::ProcessEventsFlag>, timeval) + 435
3 QtCore 0x00000001012153e2 QEventDispatcherUNIX::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 178
4 QtCore 0x00000001011deb94 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
5 QtCore 0x00000001011def44 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 324
6 QtCore 0x00000001010c79b8 QThread::exec() + 312
7 QtCore 0x00000001010cb06a QThreadPrivate::start(void
) + 298
8 libsystem_c.dylib 0x00007fff92b268bf _pthread_start + 335
9 libsystem_c.dylib 0x00007fff92b29b75 thread_start + 13

Thread 7:
0 libsystem_kernel.dylib 0x00007fff8f893bca __psynch_cvwait + 10
1 libsystem_c.dylib 0x00007fff92b2a274 _pthread_cond_wait + 840
2 QtCore 0x00000001010cb4f0 QWaitCondition::wait(QMutex, unsigned long) + 272
3 QtCore 0x00000001010bcc52 QThreadPoolThread::run() + 498
4 QtCore 0x00000001010cb06a QThreadPrivate::start(void
) + 298
5 libsystem_c.dylib 0x00007fff92b268bf _pthread_start + 335
6 libsystem_c.dylib 0x00007fff92b29b75 thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000115008ba0 rcx: 0x00000000000f9d90 rdx: 0x0000000101a9a660
rdi: 0x00007fff5fbf5990 rsi: 0x00007fff5fbf5958 rbp: 0x00007fff5fbf5b60 rsp: 0x00007fff5fbf59c0
r8: 0x0000000000000003 r9: 0x0000000112621090 r10: 0x00000000a4445b27 r11: 0x00000000ee5e53f0
r12: 0x00007fff5fbf5d88 r13: 0xaaaaaaaaaaaaaaab r14: 0x000000011500b920 r15: 0x0000000000000000
rip: 0x0000000101530ddf rfl: 0x0000000000010202 cr2: 0x0000000000000090
Logical CPU: 0

Binary Images:
0x100000000 - 0x10009afe7 +net.sourceforge (??? - 1.1.0) <5509D6BD-023D-318C-9E75-4793B7670F02> /Applications/Avogadro.app/Contents/MacOS/Avogadro
0x1000f3000 - 0x1001d6fe7 +QtOpenGL (4.8.2 - compatibility 4.8.0) <42676C48-D07B-A109-6C22-7CC6327B4F76> /Applications/Avogadro.app/Contents/Frameworks/QtOpenGL.framework/Versions/4/QtOpenGL
0x100220000 - 0x100c3afff +QtGui (4.8.2 - compatibility 4.8.0) <61731FE8-3F6E-BC82-7623-C211FE6B22CB> /Applications/Avogadro.app/Contents/Frameworks/QtGui.framework/Versions/4/QtGui
0x100f01000 - 0x101040fef +QtNetwork (4.8.2 - compatibility 4.8.0) <E01C7A22-2CB0-1C50-C33F-26B552ECAB5D> /Applications/Avogadro.app/Contents/Frameworks/QtNetwork.framework/Versions/4/QtNetwork
0x1010a3000 - 0x10136fff7 +QtCore (4.8.2 - compatibility 4.8.0) <11D4B8A7-C37D-F9EC-CBB3-4A618FFAD2DC> /Applications/Avogadro.app/Contents/Frameworks/QtCore.framework/Versions/4/QtCore
0x10140e000 - 0x1015c7ff7 +libopenbabel.4.0.0.dylib (4.0.0 - compatibility 4.0.0) <6543D5FB-4780-3DB2-9262-D62EC7632193> /Applications/Avogadro.app/Contents/lib/libopenbabel.4.0.0.dylib
0x1016a4000 - 0x10176fff7 +libavogadro.1.1.0.dylib (1.1.0 - compatibility 1.0.0) <B7CB5A1C-EC29-384A-8912-7EA30B7D6EA8> /Applications/Avogadro.app/Contents/lib/libavogadro.1.1.0.dylib
0x1017fb000 - 0x101801fff com.apple.agl (3.2.0 - AGL-3.2.0) <AB0B5D3F-BA2A-3366-830A-EF9258C18276> /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x101f34000 - 0x101f68fff com.apple.security.csparser (3.0 - 55148.6) <CAA9817C-3D70-369D-894D-AA8034EEF2DD> /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
0x103f15000 - 0x103f15ff3 +cl_kernels (??? - ???) <3A91919B-DF5E-4191-A0DD-EA283BFA94E6> cl_kernels
0x10ae39000 - 0x10ae3fff7 +libqgif.dylib (??? - ???) <1EFEABEA-7A89-8A02-0E25-76448C59F38D> /Applications/Avogadro.app/Contents/plugins/imageformats/libqgif.dylib
0x10ae44000 - 0x10ae4aff7 +libqico.dylib (??? - ???) <63917104-3AC6-5D38-9CC4-2ACA392B1723> /Applications/Avogadro.app/Contents/plugins/imageformats/libqico.dylib
0x10ae50000 - 0x10ae8bff7 +libqjpeg.dylib (??? - ???) <9489B235-698A-9BA6-A34E-6DF8A8641195> /Applications/Avogadro.app/Contents/plugins/imageformats/libqjpeg.dylib
0x10ae94000 - 0x10aee8fe7 +libqmng.dylib (??? - ???) <00E842BE-D9B3-CFA2-3E45-381FBDA58ECD> /Applications/Avogadro.app/Contents/plugins/imageformats/libqmng.dylib
0x10aef9000 - 0x10aefbfff +APIInterface.so (??? - ???) <FB5596DC-C6BF-3B65-9232-C8AE04D422DD> /Applications/Avogadro.app/Contents/lib/openbabel/APIInterface.so
0x10b100000 - 0x10b104ff7 +libqsvg.dylib (??? - ???) <888442BA-9D8E-A297-C17C-699F375D746C> /Applications/Avogadro.app/Contents/plugins/imageformats/libqsvg.dylib
0x10b109000 - 0x10b159fef +QtSvg (4.8.2 - compatibility 4.8.0) <7B6879D3-9D53-14A7-E016-E5A126FD39C8> /Applications/Avogadro.app/Contents/Frameworks/QtSvg.framework/Versions/4/QtSvg
0x10b17a000 - 0x10b1b7fe7 +QtXml (4.8.2 - compatibility 4.8.0) <C4842ACB-12FC-5031-C93C-4371599BA945> /Applications/Avogadro.app/Contents/Frameworks/QtXml.framework/Versions/4/QtXml
0x10b1d1000 - 0x10b1d5fff +libqtga.dylib (??? - ???) <77CD3C3B-9224-891D-6FFB-FE569A4F5A69> /Applications/Avogadro.app/Contents/plugins/imageformats/libqtga.dylib
0x10b1da000 - 0x10b1deff7 +atomindexcolor.so (??? - ???) <FD33A86B-E2FE-38BC-8D17-4621AFEB98ED> /Applications/Avogadro.app/Contents/lib/avogadro/colors/atomindexcolor.so
0x10b1e4000 - 0x10b1e8ff7 +chargecolor.so (??? - ???) <23B9E189-B7F6-3D6D-890E-4F307215AF9E> /Applications/Avogadro.app/Contents/lib/avogadro/colors/chargecolor.so
0x10b1ee000 - 0x10b1f3fe7 +customcolor.so (??? - ???) <CAE4CABF-3B47-3A18-B5E4-2E1E5108D840> /Applications/Avogadro.app/Contents/lib/avogadro/colors/customcolor.so
0x10b1fa000 - 0x10b1fefff +distancecolor.so (??? - ???) <90A24122-6D5C-3001-A520-6C413EC37410> /Applications/Avogadro.app/Contents/lib/avogadro/colors/distancecolor.so
0x10b204000 - 0x10b20bfff +residuecolor.so (??? - ???) <80A92C0D-7728-3F8E-866C-4B217B8FA454> /Applications/Avogadro.app/Contents/lib/avogadro/colors/residuecolor.so
0x10b214000 - 0x10b21afe7 +smartscolor.so (??? - ???) <A5F42BCF-9FD1-3164-805B-58C8C2376CC9> /Applications/Avogadro.app/Contents/lib/avogadro/colors/smartscolor.so
0x10b222000 - 0x10b226fef +forceengine.so (??? - ???) <78502D0D-4EC4-3665-9E1A-ACCBF1814478> /Applications/Avogadro.app/Contents/lib/avogadro/engines/forceengine.so
0x10b762000 - 0x10b7b7fe7 +libqtiff.dylib (??? - ???) <AAC168B5-D9C1-E498-1D87-949A46EC4F70> /Applications/Avogadro.app/Contents/plugins/imageformats/libqtiff.dylib
0x10b9c6000 - 0x10b9d0fe7 +axesengine.so (??? - ???) <05A91C16-B121-37A5-8C15-CE07D4491D18> /Applications/Avogadro.app/Contents/lib/avogadro/engines/axesengine.so
0x10b9da000 - 0x10b9effe7 +cartoonengine.so (??? - ???) <1C3F00B2-161F-3A7F-8027-820E00EF4636> /Applications/Avogadro.app/Contents/lib/avogadro/engines/cartoonengine.so
0x10b9fe000 - 0x10ba05fef +dipoleengine.so (??? - ???) <EF6CAE24-56F3-3ECE-91AF-5C4AD7D9277B> /Applications/Avogadro.app/Contents/lib/avogadro/engines/dipoleengine.so
0x10ba0f000 - 0x10ba17fef +hbondengine.so (??? - ???) <C3174C5A-DA05-3DA6-A9BD-65DECBA683C2> /Applications/Avogadro.app/Contents/lib/avogadro/engines/hbondengine.so
0x10ba21000 - 0x10ba30ff7 +labelengine.so (??? - ???) <CB09AAAD-CC3D-31D2-8990-509F21DD6E0F> /Applications/Avogadro.app/Contents/lib/avogadro/engines/labelengine.so
0x10ba3c000 - 0x10ba41fef +polygonengine.so (??? - ???) <E94E5664-15A1-3AD3-AC3E-A4ED496A8FE1> /Applications/Avogadro.app/Contents/lib/avogadro/engines/polygonengine.so
0x10ba49000 - 0x10ba5afef +qtaimengine.so (??? - ???) <65227D31-888C-34DC-AC5F-FDBC6AF09590> /Applications/Avogadro.app/Contents/lib/avogadro/engines/qtaimengine.so
0x10ba65000 - 0x10ba6efef +ribbonengine.so (??? - ???) <C3D318B8-7A02-3BC4-B741-4CDAC7891E70> /Applications/Avogadro.app/Contents/lib/avogadro/engines/ribbonengine.so
0x10ba79000 - 0x10ba80ff7 +ringengine.so (??? - ???) <26924866-E0E0-304E-84E4-0B787717019A> /Applications/Avogadro.app/Contents/lib/avogadro/engines/ringengine.so
0x10ba8a000 - 0x10ba8eff7 +simplewireengine.so (??? - ???) <31C1E4B0-6437-3DEC-9562-CF559E9D74A9> /Applications/Avogadro.app/Contents/lib/avogadro/engines/simplewireengine.so
0x10ba95000 - 0x10ba9cff7 +sphereengine.so (??? - ???) <46B765A2-A06A-3263-806D-1E2F9B3CD1FB> /Applications/Avogadro.app/Contents/lib/avogadro/engines/sphereengine.so
0x10baa6000 - 0x10baadff7 +stickengine.so (??? - ???) <36EB12AB-F22B-324B-9406-C7C781F779DA> /Applications/Avogadro.app/Contents/lib/avogadro/engines/stickengine.so
0x10bab7000 - 0x10bac4fff +surfaceengine.so (??? - ???) <333403D1-1FB3-320F-8C28-9449B49AB9E3> /Applications/Avogadro.app/Contents/lib/avogadro/engines/surfaceengine.so
0x10bad0000 - 0x10bad7fff +wireengine.so (??? - ???) <F4FF9CA5-E0D2-3001-8F22-2C5360AA8D4E> /Applications/Avogadro.app/Contents/lib/avogadro/engines/wireengine.so
0x10bae1000 - 0x10baf7fe7 +animationextension.so (??? - ???) <89315AD5-9837-3B53-8022-2ADD636E8635> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/animationextension.so
0x10bb0b000 - 0x10bb1aff7 +cartesianextension.so (??? - ???) <7FFB8690-9CFD-30C5-A912-2417AE1EE8BB> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/cartesianextension.so
0x10bb27000 - 0x10bbedfef +crystallographyextension.so (??? - ???) <1FEE03B6-009D-3ED4-9D45-4494D5D28903> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/crystallographyextension.so
0x10bc39000 - 0x10bc41fe7 +fileimportextension.so (??? - ???) <0BFEF286-4F31-3A0D-BC5D-9DC2445DB2F9> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/fileimportextension.so
0x10bc4c000 - 0x10bc68fe7 +forcefieldextension.so (??? - ???) <97CD2C7E-AFD1-32A2-8BBE-EA7EB58FC855> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/forcefieldextension.so
0x10bc82000 - 0x10bcd9fff +gamessextension.so (??? - ???) <E07D7184-F5E4-3D75-BE4C-D11F795A33A0> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/gamessextension.so
0x10bd01000 - 0x10bd1afef +gl2psextension.so (??? - ???) <28995730-CD53-3868-A8EC-5598EBC8AB24> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/gl2psextension.so
0x10bd25000 - 0x10bd2aff7 +h2methylextension.so (??? - ???) <930E1662-D9A2-3877-80A3-73CC67074D12> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/h2methylextension.so
0x10bd32000 - 0x10bd37fff +hydrogensextension.so (??? - ???) <43E47797-7969-3233-A062-35C8BFFC6F3E> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/hydrogensextension.so
0x10bd3f000 - 0x10bdbefe7 +inputfileextension.so (??? - ???) <352D3124-1EC0-3005-801A-12441703FFF8> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/inputfileextension.so
0x10bdea000 - 0x10bdf8fef +insertfragmentextension.so (??? - ???) <34C11E3E-7F93-3A55-AEA8-CE54CFFA34E5> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/insertfragmentextension.so
0x10be09000 - 0x10be1bfff +insertpeptideextension.so (??? - ???) <FE72E0F3-2776-35C5-9832-E632CB72E5A2> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/insertpeptideextension.so
0x10be29000 - 0x10be2dfe7 +invertchiralextension.so (??? - ???) <523480DF-F268-3F1F-9A92-C17CF0A3B6CF> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/invertchiralextension.so
0x10be34000 - 0x10be3efef +molecularpropextension.so (??? - ???) <821BA815-C062-364A-957A-A727ADEDF5A0> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/molecularpropextension.so
0x10be49000 - 0x10be50fe7 +networkfetchextension.so (??? - ???) <6A8B1C7B-7FAA-35CD-AFBE-E79B28AA3A2E> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/networkfetchextension.so
0x10be58000 - 0x10be77fef +orbitalextension.so (??? - ???) <8C80CE0D-69C1-3262-8179-BD758C2DC0FC> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/orbitalextension.so
0x10be9b000 - 0x10bedafff +libavogadro_OpenQube.0.1.0.dylib (0.1.0 - compatibility 0.0.0) <383933B6-9038-3580-BB4C-B490AC13017A> /Applications/Avogadro.app/Contents/lib/libavogadro_OpenQube.0.1.0.dylib
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0x10c179000 - 0x10c186fef +manipulatetool.so (??? - ???) <2CA2A3D7-B26A-3B09-A866-CD82912B1B08> /Applications/Avogadro.app/Contents/lib/avogadro/tools/manipulatetool.so
0x10c190000 - 0x10c19dff7 +selectrotatetool.so (??? - ???) <C3655044-6009-3A15-8A3B-BEE482ECDAFB> /Applications/Avogadro.app/Contents/lib/avogadro/tools/selectrotatetool.so
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0x10c1b2000 - 0x10c28afff +libinchi.0.4.1.dylib (0.4.1 - compatibility 0.0.0) <6A8189F9-3141-3648-B31B-CC929A8034BF> /Applications/Avogadro.app/Contents/lib/libinchi.0.4.1.dylib
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0x10c2cf000 - 0x10c2d3fff +acrformat.so (??? - ???) <FCC0C54B-A322-3285-A28F-D53D569E085B> /Applications/Avogadro.app/Contents/lib/openbabel/acrformat.so
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0x10c2ee000 - 0x10c2f2fff +alchemyformat.so (??? - ???) <D3E00F70-1F41-3C73-B625-36585BEBD0DC> /Applications/Avogadro.app/Contents/lib/openbabel/alchemyformat.so
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0x10c31b000 - 0x10c320ff7 +bgfformat.so (??? - ???) <02B9531C-B175-35B0-902C-BA33F9636E0A> /Applications/Avogadro.app/Contents/lib/openbabel/bgfformat.so
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0x10c35b000 - 0x10c35ffff +cccformat.so (??? - ???) <5B338F60-5E8C-3528-B18E-5CF41CD20B27> /Applications/Avogadro.app/Contents/lib/openbabel/cccformat.so
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0x10c3a0000 - 0x10c3a4fff +chemdrawct.so (??? - ???) <7E1925AD-09CE-3DEE-B380-9F290BB73957> /Applications/Avogadro.app/Contents/lib/openbabel/chemdrawct.so
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0x10c488000 - 0x10c48cff7 +cssrformat.so (??? - ???) <BFD757CF-6F14-3418-997D-C14F82AFB770> /Applications/Avogadro.app/Contents/lib/openbabel/cssrformat.so
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0x10c5e2000 - 0x10c5e7ff7 +ghemicalformat.so (??? - ???) <4B098164-4285-3883-B468-E09E11E58217> /Applications/Avogadro.app/Contents/lib/openbabel/ghemicalformat.so
0x10c5ed000 - 0x10c5f4ff7 +groformat.so (??? - ???) <948CCE4A-52B7-3F16-8374-58930830EBA2> /Applications/Avogadro.app/Contents/lib/openbabel/groformat.so
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0x10c61a000 - 0x10c62aff7 +inchiformat.so (??? - ???) <C1539E39-EBB2-3624-82AB-EECA646F7098> /Applications/Avogadro.app/Contents/lib/openbabel/inchiformat.so
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0x10c6c4000 - 0x10c6cbfff +mol2format.so (??? - ???) <17A29671-9E12-3270-8540-788C97A929C1> /Applications/Avogadro.app/Contents/lib/openbabel/mol2format.so
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0x10c6e2000 - 0x10c6e9fff +molproformat.so (??? - ???) <C3B1D21A-9D8E-3F60-944D-C9168D404D3C> /Applications/Avogadro.app/Contents/lib/openbabel/molproformat.so
0x10c6f1000 - 0x10c6f5fff +molreport.so (??? - ???) <59562849-AE05-38AD-B900-413699B4FD74> /Applications/Avogadro.app/Contents/lib/openbabel/molreport.so
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0x10c710000 - 0x10c715ff7 +mpdformat.so (??? - ???) <E2020D15-DAA4-3A5E-B89D-40D8DF047F75> /Applications/Avogadro.app/Contents/lib/openbabel/mpdformat.so
0x10c71b000 - 0x10c71ffff +mpqcformat.so (??? - ???) <B50914E5-95D9-3746-BFA4-1D7F8B240E84> /Applications/Avogadro.app/Contents/lib/openbabel/mpqcformat.so
0x10c725000 - 0x10c72aff7 +msiformat.so (??? - ???) <7E2FCE61-0D12-3E02-9671-B6048D97F1AC> /Applications/Avogadro.app/Contents/lib/openbabel/msiformat.so
0x10c730000 - 0x10c734fff +msmsformat.so (??? - ???) <B1290A92-37AB-34A3-A368-28FF3025A488> /Applications/Avogadro.app/Contents/lib/openbabel/msmsformat.so
0x10c739000 - 0x10c73bff7 +nulformat.so (??? - ???) <25E03B11-E4B2-39E0-8788-BEA39450FB13> /Applications/Avogadro.app/Contents/lib/openbabel/nulformat.so
0x10c73f000 - 0x10c746ff7 +nwchemformat.so (??? - ???) <C9F18010-DBF5-35B1-9E85-709C965DDCAF> /Applications/Avogadro.app/Contents/lib/openbabel/nwchemformat.so
0x10c74e000 - 0x10c754ff7 +opendxformat.so (??? - ???) <39D58CBB-3B83-3796-A7B7-258FAEF9BD46> /Applications/Avogadro.app/Contents/lib/openbabel/opendxformat.so
0x10c75b000 - 0x10c75ffff +outformat.so (??? - ???) <F13A3DA5-D9BF-3CBC-BAC5-93CD695CB234> /Applications/Avogadro.app/Contents/lib/openbabel/outformat.so
0x10c765000 - 0x10c76aff7 +painterformat.so (??? - ???) <1D8129BB-DAD8-3E04-9F3D-D6F62BD12442> /Applications/Avogadro.app/Contents/lib/openbabel/painterformat.so
0x10c771000 - 0x10c775fff +pcmodelformat.so (??? - ???) <8BB8C724-9520-3FC1-BF93-EABBF9D3B222> /Applications/Avogadro.app/Contents/lib/openbabel/pcmodelformat.so
0x10c77b000 - 0x10c785fff +pdbformat.so (??? - ???) <56755F9F-5BE4-3C66-839A-B814297C4154> /Applications/Avogadro.app/Contents/lib/openbabel/pdbformat.so
0x10c78d000 - 0x10c79cff7 +pdbqtformat.so (??? - ???) <EC39D97C-17EC-33EC-BE2E-7E6C9C89D9FC> /Applications/Avogadro.app/Contents/lib/openbabel/pdbqtformat.so
0x10c7a7000 - 0x10c806ff7 +plugin_charges.so (??? - ???) <2BDE401E-968C-3357-AD44-EF95D0883A26> /Applications/Avogadro.app/Contents/lib/openbabel/plugin_charges.so
0x10c84e000 - 0x10c858ff7 +plugin_descriptors.so (??? - ???) <09C8E9D3-0C3C-391F-9E4B-10DE40125375> /Applications/Avogadro.app/Contents/lib/openbabel/plugin_descriptors.so
0x10c864000 - 0x10c86dff7 +plugin_fingerprints.so (??? - ???) <C441E301-2811-3B3C-902C-4108514DCF5D> /Applications/Avogadro.app/Contents/lib/openbabel/plugin_fingerprints.so
0x10c877000 - 0x10c8d7ff7 +plugin_forcefields.so (??? - ???) <9286A6C9-34F0-3539-8315-0F180269DEE5> /Applications/Avogadro.app/Contents/lib/openbabel/plugin_forcefields.so
0x10c92f000 - 0x10c957ff7 +plugin_ops.so (??? - ???) <2093A8C7-3EC2-3C06-82BD-6A867EA2A74B> /Applications/Avogadro.app/Contents/lib/openbabel/plugin_ops.so
0x10c97c000 - 0x10c981fff +pngformat.so (??? - ???) <A1C42E7A-FC2B-38DA-B12E-E097F03D494D> /Applications/Avogadro.app/Contents/lib/openbabel/pngformat.so
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0x7fff97e12000 - 0x7fff97ec5ff7 com.apple.CoreText (220.22.0 - ???) <A7A1096F-A211-3775-BA33-08FE98D27F08> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x7fff98136000 - 0x7fff98176fe7 libGLImage.dylib (??? - ???) <0B7DAB2B-F1C6-39C7-B864-61EF683B6656> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff98177000 - 0x7fff98182ff7 com.apple.speech.recognition.framework (4.0.21 - 4.0.21) <6540EAF2-E3BF-3D2E-B4C1-F106180D6F20> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x7fff98183000 - 0x7fff9819afff com.apple.CFOpenDirectory (10.7 - 146) <E6D4F114-678B-3957-9C59-9206ECDA756E> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
0x7fff9819b000 - 0x7fff981a9ff7 libkxld.dylib (??? - ???) <01161870-E3B3-3F87-BA4A-0AA7A081F409> /usr/lib/system/libkxld.dylib
0x7fff98251000 - 0x7fff98267ff7 com.apple.ImageCapture (7.1.0 - 7.1.0) <1AD40E02-2126-377B-A0D2-CBB21D932558> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff9826a000 - 0x7fff9826afff com.apple.ApplicationServices (41 - 41) <89B6AD5B-5C75-3E83-8C2B-AA7F4C55E400> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff9826b000 - 0x7fff982a6fff libsystem_info.dylib (??? - ???) <35F90252-2AE1-32C5-8D34-782C614D9639> /usr/lib/system/libsystem_info.dylib
0x7fff98749000 - 0x7fff987c4ff7 com.apple.print.framework.PrintCore (7.1 - 366.3) <C5F39A82-0E77-3AD6-906A-20DD2EE8D374> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x7fff987d8000 - 0x7fff99176a27 com.apple.CoreGraphics (1.600.0 - ???) <576777EA-921B-3D94-98C3-40A9CF8EBD18> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff99177000 - 0x7fff99283fff libcrypto.0.9.8.dylib (44.0.0 - compatibility 0.9.8) <3A8E1F89-5E26-3C8B-B538-81F5D61DBF8A> /usr/lib/libcrypto.0.9.8.dylib
0x7fff99284000 - 0x7fff99424ff7 com.apple.QuartzCore (1.7 - 270.5) <19E5E0AB-DAA9-3F97-988C-D9A46AFB9C04> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 7
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 9572
thread_create: 4
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=209.5M resident=112.9M(54%) swapped_out_or_unallocated=96.6M(46%)
Writable regions: Total=247.8M written=25.0M(10%) resident=108.4M(44%) swapped_out=0K(0%) unallocated=139.4M(56%)

REGION TYPE VIRTUAL
=========== =======
CG backing stores 14.2M
CG image 12K
CG raster data 128K
CG shared images 3472K
CoreGraphics 16K
CoreImage 4K
CoreServices 5332K
IOKit 45.9M
MALLOC 155.3M
MALLOC guard page 64K
Memory tag=240 4K
Memory tag=242 12K
OpenCL 8K
STACK GUARD 56.0M
Stack 11.6M
VM_ALLOCATE 16.6M
CI_BITMAP 80K
DATA 21.2M
IMAGE 528K
LINKEDIT 61.6M
TEXT 147.8M
UNICODE 544K
mapped file 74.0M
shared memory 2316K
=========== =======
TOTAL 616.3M

Model: MacPro3,1, BootROM MultiBeast.tonymacx86.com, 4 processors, Intel Core i7, 3.49 GHz, 16 GB, SMC 1.30f3
Graphics: GeForce 9500 GT, GeForce 9500 GT, PCIe, 1024 MB
Memory Module: Bank0/1/A0, 4 GB, DDR3, 1333 MHz, Corsair, CMZ4GX3M1A1600C9
Memory Module: Bank2/3/A1, 4 GB, DDR3, 1333 MHz, Corsair, CMZ4GX3M1A1600C9
Memory Module: Bank4/5/A2, 4 GB, DDR3, 1333 MHz, Corsair, CMZ4GX3M1A1600C9
Memory Module: Bank6/7/A3, 4 GB, DDR3, 1333 MHz, Corsair, CMZ4GX3M1A1600C9
Bluetooth: Version 4.0.8f17, 2 service, 18 devices, 1 incoming serial ports
Network Service: Ethernet Adaptor (en0), Ethernet, en0
PCI Card: GeForce 9500 GT, sppci_displaycontroller, Slot-1
Serial ATA Device: WDC WD1001FALS-00J7B0, 1 TB
Serial ATA Device: WDC WD1001FALS-00J7B0, 1 TB
Serial ATA Device: WDC WD1001FALS-00J7B0, 1 TB
Serial ATA Device: ATAPI iHAS124 C
Serial ATA Device: OCZ-NOCTI, 60.02 GB
USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1a100000 / 2
USB Device: Logitech Camera, 0x046d (Logitech Inc.), 0x0821, 0x1a120000 / 5
USB Device: USB Receiver, 0x046d (Logitech Inc.), 0xc517, 0x1a110000 / 4
USB Device: Bluetooth V2.0 Dongle, 0x0a12 (Cambridge Silicon Radio Ltd.), 0x0001, 0x1a140000 / 3
USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1d100000 / 2

Discussion

    • status: open --> pending
     
  • Thanks, I think I fixed this bug with a recent patch. Would you be willing to try a nightly build?

     


Anonymous


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