#11 Bug in Atlas-Indel2 --always-include

2.0
closed
Danny Challis
bug (5)
2012-12-07
2012-12-07
Danny Challis
No

We discovered and fixed a bug in the Atlas-Indel2 --always-include option which caused low-quality (non-passing) sites in the always-include list to be printed with a QUAL of 'false' and missing the P value in the INFO field. In fixing this bug we also removed the ReqIncl FILTER entry, this is now only indicated in the INFO column. The FILTER column will instead show which filters the indel did not pass. Bug is fixed in revisions 149 and later.

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