Home

Dr Cyril  Pernet

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Admins:


Discussion

  • Simply download and unzip into the SPM toolbox folder.

    From the SPM pull-down menu 'adaptivethreshold' should now be available. If you click on it, you will be asked to select a SPM-T, possibly SPM.mat if not in the same folder, and the mask (the default one from SPM or the one you want) - it will then compute for a little while and return the T threshold to use. Optionally you can write the thresholded images.

    As an alternative you can skip the interface and use
    adaptive_thresholding(stat_filename, mask_filename, spm_mat_file, con_index)
    with
    stat_filename: full name (ie with path) of the spmT image
    mask_filename: full name (ie with path) of the mask image
    spm_mat_file: full name (ie with path) of the SPM.mat
    con_index: the number of the contrast image