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recently NFO has been augmented with the EncryptionStatus class.
Aperture should support it.
as of revision 2110 detecting encrypted content works for PDF, DOC, PPT and ZIP.
XLS doesn't work yet. I'll try to fix the XLS issue and close this ticket. Supporting further formats will go via separate SF tickets.
Assigned this to myself and added it to '1.3.1' group.
comitted the XLS test in rev 2113 - this closes this issue, please open additional feature requests for additional formats