Re: [Apbs-users] compiling APBS on OSX

[Nathan B. <ba...@bi...>]

Hi Scott --

We're still waiting for Apple to deliver our G5 so we can start 
providing some APBS binaries for this platform.  There has been some 
discussion of Mac compilation problems on the mailing list before; it 
appeared that many problems were related to inconsistent versions of the 
gcc and g77 compilers provided with certain Apple developer kits.

However, the problem here appears to be a missing directory.  I'm a bit 
confused about why autoconf is including 
/Users/classen/temp/src/apbs-0.3.1/lib at all; where did this come from? 
  Can you do a 'make distclean' and try configuring again with just:

FETK_INCLUDE=/programs/apbs-0.3.1/include
FETK_LIBRARY=/programs/apbs-0.3.1/lib
FETK_PREFIX=/programs/apbs-0.3.1

defined in your environment?

Thanks,

Nathan

Scott Classen wrote:

> Hello,
> I have successfully compiled MALOC 0.1-1
> I am now having problems compiling APBS-0.3.1
> 
> I am running OS X (10.3.3)
> gcc version 3.3 20030304 (Apple Computer, Inc. build 1495)
> 
> I have set the following env settings:
> 
> FETK_SRC=/Users/classen/temp/src
> FETK_INCLUDE=/programs/apbs-0.3.1/include
> FETK_LIBRARY=/programs/apbs-0.3.1/lib
> FETK_PREFIX=/programs/apbs-0.3.1
> 
> 
> after running
> ./configure --prefix=${FETK_PREFIX}
>  I get the following summary:
> 
> APBS to be linked with following libraries:   
> -L/Users/classen/temp/src/apbs-0.3.1/lib      
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lmaloc 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lblas 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lvf2c   -lm
> APBS to be compiled with following includes:  -I. 
> -I/programs/apbs-0.3.1/include
> 
> 
> I noticed that the first LIBRARY directory 
> (-L/Users/classen/temp/src/apbs-0.3.1/lib) does not exist and APBS fails 
> to compile with the following error:
> 
> gcc -DHAVE_CONFIG_H -I. -I. -I../src/aaa_inc -I. 
> -I/programs/apbs-0.3.1/include      -I/programs/apbs-0.3.1/include   -g 
> -O2 -c `test -f 'main.c' || echo './'`main.c
> /bin/sh ../libtool --mode=link g77  -g -O2 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0   -g -O2 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -o apbs  main.o 
> routines.o ../src/aaa_lib/libapbs.la  
> -L/Users/classen/temp/src/apbs-0.3.1/lib      
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lmaloc 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lblas 
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0  -lvf2c   -lm
> g77 -g -O2 -g -O2 -o apbs main.o routines.o  
> -L/programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0 
> ../src/aaa_lib/.libs/libapbs.a -L/Users/classen/temp/src/apbs-0.3.1/lib 
> /programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0/libmaloc.a 
> /programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0/libblas.a 
> /programs/apbs-0.3.1/lib/powerpc-apple-darwin7.3.0/libvf2c.a -lm
> /usr/bin/ld: warning -L: directory name 
> (/Users/classen/temp/src/apbs-0.3.1/lib) does not exist
> /usr/bin/ld: Undefined symbols:
> restFP
> saveFP
> collect2: ld returned 1 exit status
> make[1]: *** [apbs] Error 1
> make: *** [all-recursive] Error 1
> spry:/Users/classen/temp/src/apbs-0.3.1 root#
> 
> I sure there is an easy fix for this. Can someone please give me some help.
> Thanks,
> Scott
> 
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>   Scott Classen, Ph.D.
>   ACS Postdoctoral Fellow
>   Department of Molecular & Cell Biology
>   University of California, Berkeley
>   237 Hildebrand Hall #3206
>   Berkeley, CA 94720-3206
>   LAB 510.643.9491
>   FAX 510.643.9290
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 
> _______________________________________________
> apbs-users mailing list
> apb...@ch...
> http://cholla.wustl.edu/mailman/listinfo/apbs-users

-- 
Nathan A. Baker, Assistant Professor
Washington University in St. Louis School of Medicine
Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology
700 S. Euclid Ave., Campus Box 8036, St. Louis, MO 63110
Phone:  (314) 362-2040, Fax:  (314) 362-0234
URL:  http://www.biochem.wustl.edu/~baker