I am trying to get the APBS plugin within PyMol to work on an enzyme (pdb = 1jk3). It has 3 bound Ca++ and 2 Zn++. I keep getting errors and I don’t know how to handle the metal ions which most certainly effect solvation. I’m using PyMol 9.9 and APBS plugin v 1.0.0 and I am working in a Win XP environment.
Mark O. Palmier, MS
Biochemistry Department, 117 Schweitzer Hall
University of Missouri, Columbia, MO 65211
phone: (573) 884-6405; FAX: (573) 884-4812