Hi David,

   Yes,I'm using APBS 0.3.0.

   I try to use APBS 0.5.0 now. I get dielectric maps which include coarse grids from the calculation of "mg-dummy".  It runs well when I use this one map only.   Does APBS get fine grid dielectric values from coarse grids dielectric values automatically?   I wonder how to get and use the maps completely include both the coarse and fine grids.  

Thanks in advance!
Sincerely,
Xiaoqing Wang 
 

 
 
 
在2007-02-08,"David Gohara" <sdg0919@gmail.com> 写道:
Hi Xiaoqing,

Can you tell us what version of APBS you are using. From the looks
of the error it appears to be an older version. We've recently fixed
a few issues relating to boundary conditions in APBS 0.5.0, so you
may want to try the latest version to see if the problem still exists.

Let us know,

Dave

On Feb 8, 2007, at 8:23 AM, Xiaoqing Wang wrote:

> Dear,
>
> I want to use predefined dielectric maps, but i get the following
> error message:
> Vpmg_fillco: Off dielXMap at:
> Vpmg_fillco: (x,y,z) = (-16.5384,-48.533 -29.567)
> VASSERT: ASSERTION FAILURE! filename vpmg-setup.c, line 1207, (0)
>
> I am using "mg-para cglen fglen ......" in the calculation when i
> write and then read the maps. But i found that it only can write
> the dielectric maps include fine grids,am I right? So,I try to set
> the fine grids the same as the coarse grids for getting the maps
> include coarse grids. But the same errors appeared when i read the
> two maps and using "usemap 1 usemap 2".
>
> I wonder how to get the dielectric maps which include coarse grids
> or maps include both the coarse and fine grids? Is it one map
> include both two grids or two maps? If it is two maps ,how to use
> them?
>
> Thanks in advance!
> Sincerely,
> Xiaoqing Wang



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