Hi Madhu --
I am trying to calculate apolar contributions to binding of two protein
monomers. I had looked at example inputs in the directory alkanes and
born. The parameters in both the inputs are different.
It is not clear to me how I should decide about the input parameters for
protein of my interest.
which parameters file I need to inculde for proteins (parm.dat)?
Is there any other place I can get example input files for the
apolar energy contribution for protein-protein interaction?
Thanks for any help.