Do you have any non LATIN-9 encoding characters in your PDB file? That can cause these types of errors.
Pacific Northwest National Laboratory
From: Vicky James [mailto:firstname.lastname@example.org]
Sent: Thursday, October 06, 2011 6:45 AM
Subject: [apbs-users] Still having problems with the server..
I know that the PDB2PQR server has recently come back online after being down for a while.
However, I tried the server today and I am still getting errors. They are the same each time for whatever .pdb file or PDB ID I try to submit.
I have attached a screen shot of the webpage showing the sequence of function calls leading up to the error.
I'm afraid that I can't work out what they mean..
Hope you can help.