Hi Daisy –


That’s a good question; unfortunately, I don’t know enough about PyMOL to answer.  I’m hoping that someone else on the list can help you with suggestions on how to do this.



Nathan Baker
Pacific Northwest National Laboratory
Tel:  509-375-3997


From: Daisyang [mailto:daisyang095@gmail.com]
Sent: Friday, September 23, 2011 11:47 AM
To: apbs-users@googlegroups.com
Subject: [apbs-users] Can I use pymol command line to run APBS ?


Basically what I am doing is to run pymol through matlab or python, pymol has several command lines for basic operations, I was wondering if I could call APBS by using the pymol command line so that I can run APBS through matlab or python ?