Hi Daisy –
That’s a good question; unfortunately, I don’t know enough about PyMOL to answer. I’m hoping that someone else on the list can help you with suggestions on how to do this.
Pacific Northwest National Laboratory
From: Daisyang [mailto:firstname.lastname@example.org]
Sent: Friday, September 23, 2011 11:47 AM
Subject: [apbs-users] Can I use pymol command line to run APBS ?
Basically what I am doing is to run pymol through matlab or python, pymol has several command lines for basic operations, I was wondering if I could call APBS by using the pymol command line so that I can run APBS through matlab or python ?