Dear Sir,

 

I submit an apbs run through pdb2pqr server. I keep getting the following error:

 

Vcom_ctor2: process 0 of 1 is ALIVE!

Valist_readPQR:  Error parsing atom 8423!

Please double check this atom in the pqr file, e.g., make sure there are no concatenated fields.

Error reading molecules!

 

The following is the section near 8423

 

ATOM   8416  CA  LYS  1043      93.750 -97.459  44.360 -0.0000 2.0000

ATOM   8417  C   LYS  1043      93.537 -97.806  42.886  0.5500 1.7000

ATOM   8418  O   LYS  1043      92.400 -97.957  42.417 -0.5500 1.4000

ATOM   8419  CB  LYS  1043      94.126 -98.715  45.148  0.0000 2.0000

ATOM   8420  CG  LYS  1043      94.593 -98.441  46.569  0.0000 2.0000

ATOM   8421  CD  LYS  1043      94.926 -99.730  47.300  0.0000 2.0000

ATOM   8422  CE  LYS  1043      95.415 -99.455  48.712  0.3300 2.0000

ATOM   8423  NZ  LYS  1043      95.722-100.712  49.448 -0.3200 2.0000

ATOM   8424  HA  LYS  1043      94.523 -96.816  44.427  0.0000 0.0000

ATOM   8425  HE2 LYS  1043      96.244 -98.890  48.665  0.0000 0.0000

ATOM   8426  HE3 LYS  1043      94.706 -98.947  49.210  0.0000 0.0000

ATOM   8427  HG2 LYS  1043      95.410 -97.865  46.538  0.0000 0.0000

ATOM   8428  HG3 LYS  1043      93.868 -97.965  47.065  0.0000 0.0000

ATOM   8429  HZ1 LYS  1043      96.665-100.985  49.259  0.3300 0.0000

 

I could not find anything wrong. This file was generated by pdb2pqr server without any modification.

Is there a size limitation for number of atom?

 

Help!

 

Yen-Chywan