This is a patch for tarchive2amos from AMOS 2.0.0. I am on OS X 10.4.8 with Perl 5.8.6.
When trying to convert a sequence in FASTA format and its corresponding quality file, I encounter:
% ../amos-2.0.0/bin/tarchive2amos -o test test.seq
Parsing test.seq and test.qual
Died at /Users/davemessina/Desktop/amos-2.0.0/lib/AMOS/AmosFoundation.pm line 272, <QUAL> line 44.
This is due to a limitation in the regex on line 529 of tarchive2amos.
The attached tarball includes the test.seq and test.qual which can be used to reproduce the bug, and a patch to fix tarchive2amos.
Hope this helps,