Re: [AMOS-help] Help to install in windows 64bites

[Adam P. <aph...@gm...>]

Hi Juan,
Hawkeye is not well suited for visualizing the outputs of De Bruijn
assemblers like SOAPdenovo. Instead, I would recommend you map your
original reads to your assembly using a tool like BWA and then visualize
the resulting BAM file in a short read viewer like IGV or Tablet.

Best,
-Adam



On Fri, Nov 22, 2013 at 8:49 AM, Lobaton Garces, Juan David (CIAT) <
j.d...@cg...> wrote:

>  Hello
>
>
> Have a good day
>
>
>
> My name is Juan. I am just starting in bioinformatics and I have a task to
> assemble *denovo* several paired end reads from different types of bean.
>
>
>
> I used SOAPdenovo for this and now I want to visualize the results. That’s
> why Hawkeye is important to me.
>
>
>
> I already got the AMOS winzip but am not and expertise person in
> computational so am having trouble to install it and I don’t want to make
> it wrong.
>
>
>
> Please can you help to install the software… I am using a windows 64 bites
> platform.
>
>
>
> Thanks for your time and collaboration
>
>
>
> Best regards
>
>
>
>
>
> Juan David Lobaton Garces
>
> M.Sc. Molecular genetics
>
> University of Leicester
>
> CIAT bioinformatics
>
> Bean research group
>
>
>
>
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