I would like to evaluate and get some statistics for a draft genome assembly using Hawkeye.
I did not generate the assembly, but have access to contig and scaffold files (in fasta format) as well as a .agp file. I also have access to the raw paired-end reads that were used to generate the assembly (in fastq format), with no information about insert size.
I would be grateful if somebody could guide me here. The information I could find did not look up to date.