From: Jingjing Jin <jjin01@ma...> - 2012-06-13 16:32:14
After running SOAP assembly, I am trying to scaffold them using bambus2.
However, when I convert the contig file into afg file, there is an
error like this:
[jjin@... bambus2]$ /diag/software/abyss-1.3.4/bin/./abyss-samtoafg
../oil_palm.contig ../DNA_oil_palm_bowtie.sam > assembly.afg
Died at /diag/software/abyss-1.3.4/bin/./abyss-samtoafg line 105, <>
Can anyone give me some suggestions?