I think it should be sufficient to have the atom names along the
backbone correct (CA, N, C) and to have increasing residue numbering. If
you like you can send me your file and I'll have a look.
Johnny Pham wrote, On 11/15/12 09:41:
> I was wondering if I have unnatural amino acids in beta sheet mimicking
> peptides, is there a way to have them show up as a beta sheet in the
> cartoon representation? I understand the code:
> alter 1-11/, ss='S'
> as an example of assigning residues 1-11 as a beta sheet but how do I
> tackle artificial amino acids. Thanks!