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[Samtools-devel] adapter suffix length tag? (for alignment optional
field)
From: David K Jackson <david.jackson@sa...> - 2012-08-09 12:54
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Is there any precedent for a SAM alignment record optional field tag describing the length of 3' (suffix if 0x10 in bit field is not set) sequence which is identified as adapter, i.e. to be hard clipped later or ignored by an aligner? If not, does any one have any thoughts on using "A3" for this purpose (adapter 3' )? David -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. |
| Thread | Author | Date |
|---|---|---|
| [Samtools-devel] adapter suffix length tag? (for alignment optional field) | David K Jackson <david.jackson@sa...> |