Hi David (and list),
Your PyMOL sessions are fine, it's the save syntax you're using.
Please use the following syntax when saving via the command line:
save fileName.pdb, aPyMOLSelection
It's important that the filename come first, and be immediately
followed by a comma. Please check "help save" for more information.
If you're saving a multi-state system (your PSE has two states) then
you can add the state flag as
save fileName.pdb, aPyMOLSelection, state=0
to save all states or
save fileName.pdb, aPyMOLSelection, state=2
to save state 2.
Cheers,
-- Jason
On Thu, Jan 27, 2011 at 7:59 PM, Jason Vertrees
<jason.vertrees@...> wrote:
> Hi David,
>
> Can you please send me the PSE? If not, do you have multiple states?
> Are you using the save command or the GUI?
>
> Cheers,
>
> -- Jason
>
> On Thu, Jan 27, 2011 at 1:50 PM, David A. Horita <dhorita@...> wrote:
>> Hi,
>> I've apparently managed to create a pse of a protein that loads fine but
>> won't save the pdb coordinates (I get a file with END in it, and nothing
>> else).
>> Any ideas how to get the coordinates out?
>>
>> pymol 1.1b3 linux, windows (same pse has same result under both OS's)
>>
>> Thanks,
>> Dave
>>
>> -----------------------------
>> David A. Horita, Ph.D.
>> Department of Biochemistry
>> Wake Forest University School of Medicine
>> Winston-Salem, NC 27157-1016
>> Tel: 336 713-4194
>> Fax: 336 716-7671
>> email: dhorita@...
>> web: http://www1.wfubmc.edu/biochem/faculty/Horita.htm
>>
>> ------------------------------------------------------------------------------
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>
>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) Jason.Vertrees@...
> (o) +1 (603) 374-7120
>
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) Jason.Vertrees@...
(o) +1 (603) 374-7120
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