On Tue, 2 Sep 2003, Li, Jing wrote:
> If when I run insert_tigr_annotations.pl I can't get evidnece_code from
> RGD's data, can I just ignore it? Is there effect of the result?
Hi Jing,
Evidence codes should be non-NULL for an annotation. Hmmm... Here's are
the evidence codes that we are using:
###
mysql> select * from evidence_type;
+------------------+---------------+-------------------------------------------------+
| evidence_type_id | evidence_code | evidence_long
|
+------------------+---------------+-------------------------------------------------+
| 1 | IDA | inferred from direct assay
|
| 2 | IEA | inferred from electronic annotation
|
| 3 | IEP | inferred from expression pattern
|
| 4 | IGI | inferred from genetic interaction
|
| 5 | IMP | inferred from mutant phenotype
|
| 6 | IPI | inferred from physical interaction
|
| 7 | ISS | inferred from sequence or structural
similarity |
| 8 | NAS | non-traceable author statement
|
| 9 | ND | no biological data available
|
| 10 | TAS | traceable author statement
|
| 12 | IC | inferred by curator
|
+------------------+---------------+-------------------------------------------------+
###
Do these match up with what RGD would like to use?
By the way, we've finished writing a preliminary Term loader that uses the
Gene Ontology XML format from Dageditor. Would you like to test it?
|