Date: Tuesday May 13, 2008 @ 5:23
Author: luisa_montecchi
http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/mi/rel25/data
Update of /cvsroot/psidev/psi/mi/rel25/data
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15746/mi/rel25/data
Modified Files:
LASTAC psi-mi25.obo
Log Message:
- format has been upgraded from OBO1.0 to OBO1.2 format
- taking advantage of the 1.2 format, two synonym types as been created 'short label' and 'alternate name' (see definitions in the header)
- terms can now belong to different subsets also defined in the header one being the 'usual' PSI-MI (called PSI-MI slim) and a new set of terms dedicated to drug-target interactions (called Drugable)
- !!!!warning!!!! Note one term (heavily used) term has been obsoleted
MI:0218 physical interaction, it is now replaced by two terms with more fine grained meaning: association (or affinity complex) and physical association (more functional complex). For bulk remapping a possible criteria can be: whatever physical interaction that has among its participants a bait should become 'association' MI:0914 the others can become 'physical association' MI:0915. Two hybrid interactions are an expection and can be 'physical association' MI:0915.
I have just released the obo file for PSI-MI activities covering the following tracker issues:
1945124 AlphaScreen
1941929 udape url of pirsf
1935512 AU1 tag
1931436 experimental prep, new exp role heat shock prot
1893514 lexa vp16
1893511 This should be lexa b42 complementation
1887958 Ribonuclease
1881298 interaction detection: mass spectrometry
1748485 crosslinkers as PTM
1710745 association/physical/direct
I also added other terms from informal requests I received and was dicussed during the PSI meeting :
- addition of databases MBIDB, matrixdb, iRefIndex
- addition of polysaccaride as interactor type
- addition of 103 terms dedicated to drugs
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