have you tried one of the alignment commands (align, super, cealign)?
You can't align "files", only "objects". So if your session files
contain only one object each, this is trivial. If they contain multiple
objects which need to be aligned in concert, you need the "matrix_copy"
Hope that helps.
On 05/11/2012 09:49 PM, Sajeewa Pemasinghe wrote:
> I have three intramolecular tunnels in three pymol session (.pse) files.
> Two .pse files are corresponding to the same snapshot in molecular
> dynamics. The third .pse file is
> for a different snapshot. I want to merge these .pse files using
> commands like
> load first.pse
> load second.pse,partial=1
> load third.pse,partial=1
> The problem is the third.pse file which is corresponding to a different
> snapshot in molecular dynamics is not aligning properly if I do like
> above. Could anyone please advise
> me on how to align all the three .pse files into one merged .pse file?
> I highly appreciate your help.
> Thank you
> Sajeewa Dewage
MPI for Developmental Biology